nf-core / nascentLinks
Nascent Transcription Processing Pipeline
☆20Updated 2 months ago
Alternatives and similar repositories for nascent
Users that are interested in nascent are comparing it to the libraries listed below
Sorting:
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated last week
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 2 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 3 months ago
- simplified cellranger for long-read data☆19Updated 3 weeks ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 11 months ago
- ☆25Updated 3 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated 10 months ago
- interactive plots for differential expression analysis☆34Updated 3 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 6 months ago
- Long read to rMATS☆32Updated 2 years ago
- ☆32Updated 9 months ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 5 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 5 months ago
- ☆28Updated 2 months ago
- ☆17Updated last month
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Calculate and plot distributions of genomic ranges☆26Updated 4 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆48Updated 2 weeks ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- ☆17Updated last year
- Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆17Updated 2 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago