nf-core / nascent
Nascent Transcription Processing Pipeline
☆19Updated this week
Alternatives and similar repositories for nascent:
Users that are interested in nascent are comparing it to the libraries listed below
- Workflow for Sequenza, cellularity and ploidy☆18Updated 3 weeks ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 6 months ago
- interactive plots for differential expression analysis☆32Updated last month
- ☆28Updated 4 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- ☆23Updated 3 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆34Updated last week
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- ☆21Updated 2 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Snakemake pipeline for running MAJIQ☆22Updated last year
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆10Updated 11 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Isoform-level functional RNA-Seq analysis 🧬☆23Updated 4 months ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- An R package to process and analyze transcriptomic data☆17Updated 7 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 months ago
- Long read to rMATS☆31Updated last year
- ☆12Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- ☆15Updated 2 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated last week
- R package for DNA methylation analysis☆18Updated 8 months ago