nf-core / nascentLinks
Nascent Transcription Processing Pipeline
☆19Updated 3 weeks ago
Alternatives and similar repositories for nascent
Users that are interested in nascent are comparing it to the libraries listed below
Sorting:
- Two pass alignment for long reads☆22Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆28Updated 6 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated last month
- Differential ATAC-seq toolkit☆27Updated last year
- interactive plots for differential expression analysis☆32Updated last week
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 2 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 3 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated last week
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- ☆15Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆39Updated 2 weeks ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- R package for DNA methylation analysis☆18Updated 10 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 8 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 3 weeks ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 2 weeks ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆30Updated last year
- iread☆24Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆24Updated last week