Nascent Transcription Processing Pipeline
☆25Oct 7, 2026Updated this week
Alternatives and similar repositories for nascent
Users that are interested in nascent are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆19Updated this week
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 6 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Sep 16, 2026Updated 3 weeks ago
- Customer workshop materials☆19May 13, 2026Updated 4 months ago
- A modular, containerized pipeline for PRO-seq data processing☆13Mar 6, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data☆14Mar 12, 2024Updated 2 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆69Updated this week
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Detecting Regulatory Elements using GRO-seq and PRO-seq☆42Apr 30, 2025Updated last year
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆14Updated this week
- An analysis pipeline for Nanostring nCounter expression data.☆18Sep 11, 2026Updated 3 weeks ago
- nf-test utility functions☆13Sep 29, 2026Updated last week
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆33Updated this week
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Sep 29, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Oct 3, 2026Updated last week
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 5 years ago
- Demultiplexing pipeline for sequencing data☆61Updated this week
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆31Dec 13, 2024Updated last year
- A small-RNA sequencing analysis pipeline☆101Oct 2, 2026Updated last week
- RNA-seq analysis pipeline for detection of gene-fusions☆174Sep 24, 2026Updated 2 weeks ago
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆357Sep 25, 2026Updated 2 weeks ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆113Updated this week
- Pipeline for the identification of (coding) gene structures in draft genomes.☆44Jul 28, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ATAC-seq peak-calling and QC analysis pipeline☆231Sep 30, 2026Updated last week
- CLI tool to verify workflow reproducibility☆17Jan 29, 2024Updated 2 years ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Updated this week
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 4 months ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆245Updated this week
- Precision HLA typing from next-generation sequencing data☆80Updated this week
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆61Updated this week
- Take command of your set enrichment analyses.☆23Updated this week
- A GitHub action to install Nextflow☆31Aug 20, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Converts bam or cram files to fastq format and does quality control.☆32Updated this week
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated last month
- gkmSVM R package☆17Aug 31, 2026Updated last month
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆31May 17, 2026Updated 4 months ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 4 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago