Alternatives and similar repositories for IGoR

Users that are interested in IGoR are comparing it to the libraries listed below

• andrewrech / antigen.garnish
  ☆48Updated 3 years ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆62Updated this week
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆52Updated 6 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆90Updated 3 months ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆39Updated 7 years ago
• mikessh / migmap
  HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
  ☆53Updated last year
• innate2adaptive / decombinator
  Decombinator v5: fast, error-correcting analysis of TCR repertoires
  ☆27Updated 5 months ago
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆32Updated 5 years ago
• BUStools / bustools
  Tools for working with BUS files
  ☆102Updated 8 months ago
• inutano / chip-atlas
  ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser
  ☆81Updated last month
• vanallenlab / comut
  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
  ☆96Updated last year
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 4 years ago
• shendurelab / MPRAflow
  A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
  ☆35Updated last year
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• frankligy / SNAF
  Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…
  ☆52Updated last year
• uubram / RTCR
  A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.
  ☆23Updated 2 years ago
• hart-lab / bagel
  BAGEL software
  ☆28Updated 2 years ago
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆42Updated 3 months ago
• pogorely / ALICE
  Detecting TCR involved in immune responses from single RepSeq datasets
  ☆27Updated 6 years ago
• hart-lab / drugz
  DRUGZ software
  ☆24Updated 4 years ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆43Updated 3 months ago
• ernstlab / full_stack_ChromHMM_annotations
  Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
  ☆38Updated last year
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆74Updated this week
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆30Updated 3 months ago
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆29Updated 6 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆126Updated 11 months ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆57Updated 6 years ago
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆65Updated last year
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 5 years ago
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆50Updated 11 months ago