Alternatives and similar repositories for IGoR

Users that are interested in IGoR are comparing it to the libraries listed below

• andrewrech / antigen.garnish
  ☆48Updated 2 years ago
• mikessh / migmap
  HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
  ☆52Updated 7 months ago
• pogorely / ALICE
  Detecting TCR involved in immune responses from single RepSeq datasets
  ☆27Updated 5 years ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆59Updated last week
• mikessh / migec
  A RepSeq processing swiss-knife
  ☆41Updated last year
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆38Updated 6 years ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆42Updated 9 months ago
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆30Updated 3 years ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 4 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆53Updated 3 years ago
• BUStools / bustools
  Tools for working with BUS files
  ☆99Updated last week
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• uubram / RTCR
  A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.
  ☆22Updated last year
• theislab / tcellmatch
  ☆40Updated 4 years ago
• innate2adaptive / decombinator
  Decombinator v5: fast, error-correcting analysis of TCR repertoires
  ☆24Updated last week
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆50Updated 5 years ago
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆31Updated 4 years ago
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆25Updated last year
• ElementoLab / scTCRseq
  Processing of single cell RNAseq data for the recovery of TCRs in python
  ☆28Updated 4 years ago
• GuoBioinfoLab / CATT
  An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
  ☆21Updated last year
• simone-rizzetto / VDJPuzzle
  T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data
  ☆10Updated 7 years ago
• repseqio / library-imgt
  IMGT segment library converted to RepSeq.IO JSON format
  ☆13Updated 2 years ago
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆30Updated 3 years ago
• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆49Updated last year
• mozack / vdjer
  V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
  ☆29Updated 2 years ago
• bm2-lab / pTuneos
  pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
  ☆36Updated 3 years ago
• shendurelab / MPRAflow
  A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
  ☆32Updated 4 months ago