nextflow-io / vscode-language-nextflowLinks
Nextflow language support for Visual Studio Editor
☆35Updated last week
Alternatives and similar repositories for vscode-language-nextflow
Users that are interested in vscode-language-nextflow are comparing it to the libraries listed below
Sorting:
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 weeks ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated 2 weeks ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- Fast sequencing data quality metrics☆31Updated 2 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 5 months ago
- Nextflow Tower CLI tool☆50Updated this week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated 3 weeks ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Updated 3 years ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- Testing building mulled containers for multi-requirement tools.☆80Updated 2 weeks ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated 3 weeks ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- conda recipes for genomic data☆84Updated 4 years ago
- vembrane filters VCF records using python expressions☆66Updated last month
- Reference genome resource manager☆74Updated last year
- TIDDIT - structural variant calling☆77Updated 7 months ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Complex structural variant visualization for HiFi sequencing data☆42Updated 3 weeks ago
- BigWig and BAM utilities☆98Updated last year
- Structural variant pipeline☆17Updated 5 years ago
- Annotating principal splice isoforms☆16Updated last year
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆37Updated 5 months ago
- Efficiently read and write sequencing data from Python☆68Updated last month