Alternatives and similar repositories for vscode-language-nextflow

Users that are interested in vscode-language-nextflow are comparing it to the libraries listed below

• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆40Updated last year
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 3 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆64Updated 3 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆27Updated last week
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 7 months ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆62Updated last week
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆45Updated 2 weeks ago
• seqeralabs / tower-cli
  Nextflow Tower CLI tool
  ☆50Updated last month
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last year
• nf-core / seqinspector
  QC pipeline to inspect your sequences
  ☆14Updated last month
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆76Updated 5 months ago
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated last year
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 2 years ago
• nf-core / detaxizer
  A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…
  ☆21Updated 3 weeks ago
• nextflow-io / nf-prov
  ☆30Updated 2 weeks ago
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆44Updated 3 weeks ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• MultiQC / test-data
  Test data for MultiQC.
  ☆21Updated last week
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆35Updated this week
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆66Updated 2 weeks ago
• Nazeeefa / awesome-sequencing-tech-papers
  A collection of publications on comparison of high-throughput sequencing technologies.
  ☆27Updated 8 months ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆49Updated this week
• nf-core / deepvariant
  Please consider using/contributing to https://github.com/nf-core/sarek
  ☆41Updated 4 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated 8 months ago
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆28Updated last week
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆97Updated last year