Alternatives and similar repositories for vscode-language-nextflow

Users that are interested in vscode-language-nextflow are comparing it to the libraries listed below

• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated last month
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆41Updated 2 years ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 3 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 6 months ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆45Updated last week
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆56Updated 10 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 3 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last week
• seqeralabs / tower-cli
  Nextflow Tower CLI tool
  ☆50Updated this week
• beardymcjohnface / Snaketool
  Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
  ☆53Updated 2 years ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆66Updated 2 months ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• nextflow-io / nf-prov
  Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…
  ☆30Updated last month
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated 2 years ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated last year
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆36Updated 4 months ago
• nf-core / detaxizer
  A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…
  ☆22Updated 3 weeks ago
• nf-core / deepvariant
  Please consider using/contributing to https://github.com/nf-core/sarek
  ☆41Updated 4 years ago
• nf-core / seqinspector
  Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…
  ☆14Updated this week
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated 2 years ago
• awslabs / linter-rules-for-nextflow
  Linter rules for Nextflow DSL scripts
  ☆33Updated last week
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆35Updated last year
• mahesh-panchal / nf-cascade
  A proof of concept daisy-chaining Nextflow workflows
  ☆29Updated 3 months ago
• robsyme / nf-repeatmasking
  Nextflow workflow for automatic repeat detection, classification and masking
  ☆13Updated 7 years ago
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆41Updated 4 years ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆36Updated last week
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 5 years ago