Merge transcriptome read-to-genome alignments into non-redundant transcript models
☆20Jan 21, 2026Updated 8 months ago
Alternatives and similar repositories for tmerge
Users that are interested in tmerge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GENE-SWitCH project RNA-Seq analysis pipeline☆31May 6, 2026Updated 4 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆17Sep 16, 2026Updated last week
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jul 18, 2026Updated 2 months ago
- ☆33Mar 3, 2026Updated 6 months ago
- ☆12May 6, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated 5 months ago
- ☆11Dec 12, 2014Updated 11 years ago
- Python module and utility programs for working with GFF files☆33Nov 25, 2020Updated 5 years ago
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 6 years ago
- fastest GTF/GFF-to-BED converter chilling around☆32Jun 16, 2026Updated 3 months ago
- long-read depth breaking☆12Apr 19, 2018Updated 8 years ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 3 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆16Mar 1, 2022Updated 4 years ago
- ChimPipe: Accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data☆15Jan 22, 2026Updated 8 months ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated 2 years ago
- ☆12Mar 21, 2026Updated 6 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Universal RObust Peak Annotator☆18Dec 19, 2023Updated 2 years ago
- A shiny application to visualize MCscan result☆37Jun 26, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- quickly filter fastq files by matching sequences to a set of regex patterns☆60Apr 18, 2026Updated 5 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆290Jul 7, 2026Updated 2 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 6 months ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆20Feb 28, 2022Updated 4 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆25Sep 18, 2026Updated last week
- Fast in-silico normalization algorithm for NGS data☆25Nov 1, 2021Updated 4 years ago
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- FEELnc : FlExible Extraction of LncRNA☆96Jul 23, 2025Updated last year
- A tool for recovering synteny blocks from multiple alignment☆34Oct 18, 2021Updated 4 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- Utility functions to extend and optimize GenomicRanges functionality.☆10Jul 9, 2026Updated 2 months ago
- ☆14Sep 26, 2019Updated 7 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆66May 17, 2026Updated 4 months ago
- R package for DNA methylation analysis☆21Updated this week