guigolab / tmergeLinks
Merge transcriptome read-to-genome alignments into non-redundant transcript models
☆20Updated last week
Alternatives and similar repositories for tmerge
Users that are interested in tmerge are comparing it to the libraries listed below
Sorting:
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- Structural variant caller☆55Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- perSVade: personalized Structural Variation detection☆40Updated last week
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆51Updated 2 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- ☆84Updated 10 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Updated 10 months ago
- Dot: An interactive dot plot viewer for comparative genomics☆35Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- ☆30Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Structural variant caller for low-depth long-read sequencing data☆45Updated last week
- Snakemake pipeline to analyze transposable element 'omics data.☆30Updated last week
- Population-wide Deletion Calling☆35Updated 9 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- A battery of methylation tools for PacBio HiFi reads☆47Updated last month
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago