bschiffthaler / kogia
Docker containers for bioinformatics with a small footprint
☆23Updated last year
Alternatives and similar repositories for kogia:
Users that are interested in kogia are comparing it to the libraries listed below
- Luslab nextflow modules☆14Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated last year
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 8 months ago
- Customer workshop materials☆17Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated 10 months ago
- ☆23Updated 5 years ago
- ☆19Updated 7 years ago
- k-mer similarity analysis pipeline☆20Updated 3 weeks ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 5 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 8 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 2 months ago
- UMCU Genetics Nextflow modules☆27Updated 3 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆32Updated 3 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆16Updated 6 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆31Updated last week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago