bschiffthaler / kogiaLinks
Docker containers for bioinformatics with a small footprint
☆23Updated 2 weeks ago
Alternatives and similar repositories for kogia
Users that are interested in kogia are comparing it to the libraries listed below
Sorting:
- Luslab nextflow modules☆14Updated 4 years ago
- k-mer similarity analysis pipeline☆23Updated last month
- ☆18Updated 8 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 7 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated last month
- Customer workshop materials☆18Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- A Nextflow pipeline for running synteny analysis.☆16Updated 6 months ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆18Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 months ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- CLI to automate Nextflow pipeline testing☆12Updated 3 weeks ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- Find Unique genomic Regions☆32Updated 2 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Updated 5 months ago
- UMCU Genetics Nextflow modules☆29Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated 2 years ago