A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
☆66Oct 26, 2026Updated this week
Alternatives and similar repositories for bactmap
Users that are interested in bactmap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Making whole bacterial genome sequencing data analysis easy☆116Apr 22, 2025Updated last year
- Simple bacterial assembly and annotation pipeline☆94Updated this week
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆51Sep 23, 2022Updated 4 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆23Mar 8, 2024Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆45Jul 17, 2020Updated 6 years ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆21Aug 13, 2026Updated 2 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆109Dec 11, 2023Updated 2 years ago
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline to investigate horizontal gene transfer from NGS data☆27Updated this week
- A toolbox for pangenome analysis and threshold evaluation.☆103Jul 8, 2022Updated 4 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆79Dec 5, 2023Updated 2 years ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆189Apr 16, 2025Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 9 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆159Sep 2, 2026Updated last month
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- zDB: comparative bacterial genomics made easy☆44Oct 1, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆112Oct 20, 2023Updated 3 years ago
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆14Oct 7, 2026Updated 3 weeks ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆271Jun 11, 2026Updated 4 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆99Dec 9, 2025Updated 10 months ago
- Antibiotic resistance prediction in minutes☆122Mar 27, 2026Updated 7 months ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆209Jun 10, 2026Updated 4 months ago
- An updated pipeline for pangenome investigation☆378Updated this week
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆18Feb 19, 2026Updated 8 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆525Aug 5, 2026Updated 2 months ago
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 3 years ago
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Sep 19, 2026Updated last month
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆53Feb 23, 2026Updated 8 months ago
- An nf-core (meta) pipeline for analysis of different members of Mycobacterium tuberculosis complex.☆14Updated this week