Linter rules for Nextflow DSL scripts
☆34May 25, 2026Updated 2 months ago
Alternatives and similar repositories for linter-rules-for-nextflow
Users that are interested in linter-rules-for-nextflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆43Updated this week
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- ☆92Updated this week
- Customer workshop materials☆19May 13, 2026Updated 2 months ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36May 29, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated 2 weeks ago
- This project contains the webapp sample integrated with AWS HealthOmics, which allows users such as admin and bioinformaticians to operat…☆19Nov 20, 2024Updated last year
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Updated this week
- Genomics Workflows on AWS☆148Jul 31, 2023Updated 2 years ago
- The Nextflow language server☆31Updated this week
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale product…☆12Sep 9, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 2 weeks ago
- Terraform template to create AWS resources to execute jobs using nextflow☆22Mar 1, 2023Updated 3 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆33Updated this week
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- ☆61Feb 13, 2026Updated 5 months ago
- Simple test framework for Nextflow pipelines☆189Apr 27, 2026Updated 3 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated last year
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 5 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated 3 weeks ago
- ☆18Updated this week
- Point in time artifact of the Simple Cloud Accelerator project with Third Rock Ventures☆17Oct 4, 2023Updated 2 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Updated this week
- Nextflow language support for Visual Studio Editor☆38Updated this week
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆20Mar 25, 2026Updated 4 months ago
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- The WES API is a standard way to run and manage portable workflows.☆93Jun 11, 2026Updated last month
- Malleable All-seeing Journal Of Research Artifacts☆35May 22, 2023Updated 3 years ago
- ☆20Jan 13, 2026Updated 6 months ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 6 months ago
- QC cutoffs for different genomes.☆17May 28, 2026Updated 2 months ago
- Rust in bioinformatics and computational biology☆19Oct 22, 2022Updated 3 years ago