awslabs / linter-rules-for-nextflowLinks
Linter rules for Nextflow DSL scripts
☆33Updated this week
Alternatives and similar repositories for linter-rules-for-nextflow
Users that are interested in linter-rules-for-nextflow are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated 9 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆41Updated 3 weeks ago
- ☆9Updated 7 months ago
- Customer workshop materials☆18Updated 2 years ago
- Fast sequencing data quality metrics☆26Updated last week
- A GitHub action to install Nextflow☆18Updated this week
- Portable WDL workflows for IDseq production pipelines☆31Updated 3 years ago
- ☆30Updated 3 weeks ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 4 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆37Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 11 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆29Updated 2 weeks ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 7 months ago
- Nextflow language support for Visual Studio Editor☆34Updated this week
- ☆28Updated 11 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 4 months ago
- Nextflow workflow template repository☆18Updated 3 weeks ago
- Quality of life improvements for Bioinformatics in Python.☆29Updated this week
- Test data for MultiQC.☆22Updated last week
- ☆26Updated 3 months ago
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆24Updated 2 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated this week