Output FASTQ summary statistics in JSON format
☆29Oct 30, 2022Updated 3 years ago
Alternatives and similar repositories for fastq-scan
Users that are interested in fastq-scan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Intra-species bacterial contamination detection☆25Apr 13, 2026Updated last month
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10May 15, 2026Updated last week
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Oct 14, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CFSAN Shigella Typing Pipeline☆15Jul 6, 2023Updated 2 years ago
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 3 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated last year
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆39Feb 20, 2026Updated 3 months ago
- Static website for the PH4AGE alliance☆13Oct 27, 2023Updated 2 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13May 5, 2026Updated 3 weeks ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 5 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆45Aug 20, 2025Updated 9 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆133Jan 22, 2025Updated last year
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 3 months ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆20Oct 8, 2025Updated 7 months ago
- Malleable All-seeing Journal Of Research Artifacts☆35May 22, 2023Updated 3 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…