LukeGoodsell / nextflow-vim
Nextflow plugin for VIM
☆48Updated last year
Related projects: ⓘ
- Merging paired-end reads and removing adapters☆44Updated 4 years ago
- BigWig and BAM utilities☆91Updated 5 months ago
- Reference genome resource manager☆74Updated 9 months ago
- Snakemake profile for running jobs on an LSF cluster☆36Updated last month
- Maximum likelihood demultiplexing☆46Updated last year
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆34Updated 11 months ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆27Updated 4 months ago
- A read extraction and realignment tool for next generation sequencing data☆98Updated last year
- Experimental features for Nextflow☆25Updated last month
- ☆95Updated 2 years ago
- Params validation plugin for Nextflow pipelines☆48Updated last month
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 3 months ago
- Tip and tricks for BAM files☆82Updated 6 years ago
- Tips for Nextflow and cheatsheet for channel operation☆66Updated last month
- A cookiecutter template for Snakemake workflows☆57Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆37Updated 2 years ago
- Fast fusion detection using kallisto☆80Updated 2 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆94Updated this week
- Testing building mulled containers for multi-requirement tools.☆69Updated this week
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆78Updated last year
- Fully automated generation of UCSC assembly hubs☆33Updated 7 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆74Updated 7 months ago
- An experimental repo for common snakemake rules and workflows☆46Updated 9 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated last week
- Galaxy RNA workbench☆38Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆44Updated this week
- Efficiently read and write sequencing data from Python☆61Updated 2 months ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆53Updated 4 years ago