LukeGoodsell / nextflow-vimLinks
Nextflow plugin for VIM
☆50Updated 2 years ago
Alternatives and similar repositories for nextflow-vim
Users that are interested in nextflow-vim are comparing it to the libraries listed below
Sorting:
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 6 months ago
- Reference genome resource manager☆74Updated last year
- Nextflow language support for Visual Studio Editor☆35Updated this week
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 11 months ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Maximum likelihood demultiplexing☆49Updated 9 months ago
- ☆96Updated 3 years ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- BigWig and BAM utilities☆99Updated last year
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- An experimental repo for common snakemake rules and workflows☆46Updated 10 years ago
- A Github action for running a Snakemake workflow☆62Updated last week
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- Merging paired-end reads and removing adapters☆46Updated 2 weeks ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- List of IARC bioinformatics pipelines and resources☆53Updated 3 weeks ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆89Updated 3 months ago
- Bioinformatics tool outputs converter to JSON or YAML☆35Updated 5 months ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆89Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆131Updated last month
- Merging, Annotation, Validation, and Illustration of Structural variants☆75Updated 2 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Efficiently read and write sequencing data from Python☆68Updated last month
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- The Nextflow language server☆24Updated this week