Alternatives and similar repositories for nf-training-advanced

Users that are interested in nf-training-advanced are comparing it to the libraries listed below

• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 months ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆23Updated 3 months ago
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 2 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆28Updated 3 weeks ago
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆25Updated last month
• robsyme / nf-repeatmasking
  Nextflow workflow for automatic repeat detection, classification and masking
  ☆13Updated 7 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆20Updated 3 years ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• alejandrogzi / gxf2bed
  fastest GTF/GFF-to-BED converter chilling around
  ☆27Updated last month
• Eco-Flow / synteny
  A Nextflow pipeline for running synteny analysis.
  ☆16Updated 3 months ago
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• qbic-pipelines / rnadeseq
  Differential gene expression analysis and pathway analysis of RNAseq data
  ☆32Updated 3 months ago
• UMCUGenetics / NextflowModules
  UMCU Genetics Nextflow modules
  ☆28Updated 11 months ago
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆26Updated 5 months ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 4 months ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• bschiffthaler / kogia
  Docker containers for bioinformatics with a small footprint
  ☆23Updated 2 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated last year
• nf-core / deepvariant
  Please consider using/contributing to https://github.com/nf-core/sarek
  ☆41Updated 4 years ago
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated last year
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated last month
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 5 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆27Updated last year
• micans / nextflow-idioms
  Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.
  ☆17Updated 2 months ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆24Updated 3 years ago
• awslabs / linter-rules-for-nextflow
  Linter rules for Nextflow DSL scripts
  ☆33Updated 2 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 8 months ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆14Updated last year
• brentp / seqcover
  seqcover allows users to view coverage for hundreds of genes and dozens of samples
  ☆52Updated 4 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year