micans / nextflow-idioms
Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.
☆16Updated 10 months ago
Alternatives and similar repositories for nextflow-idioms:
Users that are interested in nextflow-idioms are comparing it to the libraries listed below
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆34Updated last year
- An efficient way to guess the library type of your RNA-Seq data.☆30Updated 2 years ago
- Params validation plugin for Nextflow pipelines☆48Updated 5 months ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- A VSCode extension pack for nf-core developers.☆14Updated 3 months ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 2 years ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆14Updated 2 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆20Updated 2 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- R interface to the JBrowse 2 Linear Genome View.☆35Updated 10 months ago
- Fast FASTQ sample demultiplexing in Rust.☆58Updated last month
- This repository hosts a large collection of Nextflow snippets☆57Updated this week
- NGSNGS: Next generation simulator for next generation sequencing data☆51Updated 2 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated last month
- A shiny package for microbiome functional enrichment analysis☆37Updated 3 months ago
- BigWig and BAM utilities☆92Updated 10 months ago
- ☆21Updated 5 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 5 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- A catalogue of available long read sequencing data analysis tools☆75Updated 3 weeks ago
- Evolutionary Transcriptomics with R☆41Updated last week
- Genomic data interpretation and visualization Workshop☆19Updated last year
- Maximum Likelihood Amplicon Pipeline☆22Updated 8 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.☆21Updated 6 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week