J35P312 / FindSVLinks
Structural variant pipeline
☆17Updated 5 years ago
Alternatives and similar repositories for FindSV
Users that are interested in FindSV are comparing it to the libraries listed below
Sorting:
- ☆16Updated 5 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Location of public benchmarking; primarily final results☆18Updated 4 months ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆28Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- ☆20Updated last year
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated 11 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 11 months ago
- ☆13Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Unfazed by genomic variant phasing☆26Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Structural variant (SV) analysis tools☆36Updated 11 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- ☆9Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Sample Contamination Estimate from VCF☆19Updated 7 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- A transposition caller.☆10Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated 3 months ago