J35P312 / FindSVLinks
Structural variant pipeline
☆17Updated 5 years ago
Alternatives and similar repositories for FindSV
Users that are interested in FindSV are comparing it to the libraries listed below
Sorting:
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated 2 months ago
- Location of public benchmarking; primarily final results☆18Updated 7 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆16Updated 8 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- Unfazed by genomic variant phasing☆27Updated last year
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- ☆20Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 5 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 7 months ago
- Structural variant (SV) analysis tools☆38Updated last year
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Updated 2 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Sample Contamination Estimate from VCF☆21Updated 11 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated 3 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago