CDCgov / seqsenderLinks
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
☆38Updated 2 months ago
Alternatives and similar repositories for seqsender
Users that are interested in seqsender are comparing it to the libraries listed below
Sorting:
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆27Updated last week
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆27Updated last year
- UPHL's Reference Free Pipeline☆26Updated last month
- Recombination-free trees☆58Updated 3 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆37Updated last week
- Split Kmer Analysis☆65Updated 3 years ago
- ASMNGS20 - 2020 Conference Details☆15Updated 3 years ago
- SC2 variant detection and composition pipeline☆17Updated last year
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Bacterial surveillance pipeline.☆24Updated 2 weeks ago
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated last month
- Intra-species bacterial contamination detection☆25Updated 4 months ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Updated 10 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 7 months ago
- in silico typing of the H. influenzae cap locus☆12Updated 11 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.☆16Updated last week
- SARs-CoV-2 Primer schemes☆16Updated last month
- ☆36Updated 2 months ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆14Updated 4 months ago
- Systematic ProtEin AnnotatoR☆19Updated 8 months ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆36Updated last week
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 2 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year