Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
β41Aug 11, 2026Updated 3 weeks ago
Alternatives and similar repositories for seqsender
Users that are interested in seqsender are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 𧬠π» TOSTADAS β Toolkit for Open Sequence Triage, Annotation and DAtabase Submissionβ29Updated this week
- Bacterial surveillance pipeline.β28Updated this week
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.β21Aug 17, 2026Updated 2 weeks ago
- Viral (meta)-genome assembly pipeline.β23Jul 22, 2026Updated last month
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolatesβ15Aug 26, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Python package to update the MLST database for the mlst tool.β31Jul 22, 2026Updated last month
- UPHL's Reference Free Pipelineβ29Aug 10, 2026Updated 3 weeks ago
- StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.β19Updated this week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.β35Aug 11, 2026Updated 2 weeks ago
- Finding regions of similarity between plasmidsβ17Jul 15, 2026Updated last month
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, esβ¦β42Aug 5, 2024Updated 2 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applicationsβ19Aug 12, 2024Updated 2 years ago
- β27Aug 2, 2023Updated 3 years ago
- A simple pipeline for bacterial assembly and quality controlβ16Aug 12, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pipeline to generate NGS reads from a phylogenyβ39Sep 13, 2022Updated 3 years ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)β62Mar 23, 2023Updated 3 years ago
- Targeted Detection and Reconstruction of Plasmidsβ22May 7, 2024Updated 2 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-readβ¦β81Updated this week
- Influenza data pipeline to automate genotyping assignmentβ45Mar 19, 2026Updated 5 months ago
- Output FASTQ summary statistics in JSON formatβ29Oct 30, 2022Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta filesβ15May 18, 2023Updated 3 years ago
- Scripts and reference files to type Group A Streptococcusβ11Updated this week
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolatesβ94Jul 23, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Utility to alias and dealias pango lineagesβ23Dec 18, 2023Updated 2 years ago
- whole genome MLST analysisβ55Jun 17, 2026Updated 2 months ago
- β10Apr 16, 2025Updated last year
- SARS-Cov-2 Recombinant Finder for fasta sequencesβ50Jun 22, 2022Updated 4 years ago
- Influenza genome analysis Nextflow workflowβ27Jun 3, 2026Updated 2 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.β10Jun 9, 2026Updated 2 months ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.β17May 19, 2023Updated 3 years ago
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libraβ¦β15Feb 27, 2024Updated 2 years ago
- Plasmid and antimicrobial resistance pipelineβ16Apr 30, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- β22Jul 25, 2026Updated last month
- π₯π¦π₯PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogensβ111Updated this week
- CFSAN Shigella Typing Pipelineβ15Jun 11, 2026Updated 2 months ago
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in inputβ¦β36May 1, 2022Updated 4 years ago
- Assembly of Nanopore Sequencingβ17May 21, 2026Updated 3 months ago
- NCBI Pathogen Detection Portal toolkitβ11Sep 6, 2023Updated 2 years ago
- software to identify primers that can distinguish genomesβ20Jan 23, 2026Updated 7 months ago