CDCgov / seqsenderLinks
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
☆38Updated 3 weeks ago
Alternatives and similar repositories for seqsender
Users that are interested in seqsender are comparing it to the libraries listed below
Sorting:
- 🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission☆28Updated last week
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆57Updated last week
- Recombination-free trees☆60Updated 2 weeks ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆39Updated 3 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆58Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆41Updated last year
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- ☆26Updated 2 years ago
- Intra-species bacterial contamination detection☆25Updated 7 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆39Updated 5 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated last week
- CFSAN Shigella Typing Pipeline☆15Updated 2 years ago
- SC2 variant detection and composition pipeline☆17Updated 2 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 5 months ago
- Colinear block visualisation tool☆31Updated last year
- ASMNGS20 - 2020 Conference Details☆15Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- SARs-CoV-2 Primer schemes☆16Updated 4 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Read contamination removal☆25Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆27Updated last year
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆66Updated 5 years ago
- UPHL's Reference Free Pipeline☆26Updated 2 weeks ago
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆37Updated 2 weeks ago