CDCgov / seqsenderLinks
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
β38Updated last week
Alternatives and similar repositories for seqsender
Users that are interested in seqsender are comparing it to the libraries listed below
Sorting:
- 𧬠π» TOSTADAS β Toolkit for Open Sequence Triage, Annotation and DAtabase Submissionβ28Updated 2 months ago
- Predict plasmids from uncorrected long read dataβ41Updated last month
- Get microbial sequence data easier and fasterβ28Updated 6 years ago
- Recombination-free treesβ62Updated 3 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.β59Updated 2 years ago
- ASMNGS20 - 2020 Conference Detailsβ15Updated 3 years ago
- CFSAN Shigella Typing Pipelineβ15Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes databaseβ42Updated 5 years ago
- SARs-CoV-2 Primer schemesβ16Updated 6 months ago
- Intra-species bacterial contamination detectionβ25Updated 10 months ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxaβ40Updated 2 months ago
- Mandrake πΏ/π¨βπ¬π¦ β Fast visualisation of the population structure of pathogens using Stochastic Cluster Embeddingβ39Updated 9 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomiβ¦β60Updated 2 weeks ago
- Assembly based core genome SNP alignments for bacteriaβ25Updated 6 years ago
- A pipeline for bioinformatics analysis of bacterial genomesβ32Updated this week
- Split Kmer Analysisβ65Updated 3 years ago
- Colinear block visualisation toolβ31Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strainsβ48Updated 3 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)β28Updated 4 months ago
- β26Updated 2 years ago
- Read contamination removalβ25Updated last year
- π π« Trim, circularise and orient long read bacterial genome assembliesβ25Updated 6 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological dataβ47Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.β59Updated 8 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)β45Updated 5 years ago
- Genomic neighbor typing of bacterial pathogens using MinHashβ43Updated 2 years ago
- Fast viral consensus genome reconstructionβ25Updated 5 months ago
- Influenza data pipeline to automate genotyping assignmentβ37Updated last month
- Predict MLST directly from uncorrected long readsβ27Updated last month
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidisβ14Updated 10 months ago