mbhall88 / container_recipes
Repository with all my container recipes 👩🍳
☆15Updated last week
Related projects: ⓘ
- Output FASTQ summary statistics in JSON format☆29Updated last year
- A collection of modules and sub-workflows for Nextflow☆25Updated this week
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 4 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆26Updated this week
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Updated 2 years ago
- SARS-CoV-2 variant calling and consensus assembly pipeline☆23Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆20Updated 3 weeks ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated 9 months ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- ☆18Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆38Updated 4 years ago
- Implementation of Krona to QIIME2☆14Updated 6 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 2 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- Kraken2 Server☆20Updated 7 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 3 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆30Updated 2 months ago
- Find Unique genomic Regions☆29Updated 2 weeks ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Real-time species-typing visualisation for nanopore data.☆13Updated last year
- Population-wide Deletion Calling☆34Updated 2 weeks ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- Lossless VCF compression☆18Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 2 years ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆20Updated 4 years ago