mbhall88 / container_recipes
Repository with all my container recipes 👩🍳
☆16Updated 8 months ago
Alternatives and similar repositories for container_recipes
Users that are interested in container_recipes are comparing it to the libraries listed below
Sorting:
- A collection of modules and sub-workflows for Nextflow☆26Updated last week
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago
- mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes☆13Updated 4 months ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated last year
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- ☆19Updated 8 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- ☆13Updated 7 years ago
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Updated 3 years ago
- Find Unique genomic Regions☆29Updated last month
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 10 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 11 months ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆41Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 8 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago