Nextflow workflow for automatic repeat detection, classification and masking
☆13Feb 19, 2018Updated 8 years ago
Alternatives and similar repositories for nf-repeatmasking
Users that are interested in nf-repeatmasking are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Human and mouse genome assemblies customized for rDNA mapping☆12Mar 7, 2025Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 6 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 4 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 2 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Plot multiple sequence alignment (MSA)☆16Sep 23, 2024Updated last year
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 2 years ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- Template for a computational lab notebook using bookdown☆13Mar 16, 2018Updated 8 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Jun 30, 2024Updated last year
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 6 years ago
- repository for the single cell RNA-Seq workshop☆31Apr 20, 2021Updated 4 years ago
- Find Unique genomic Regions☆32Mar 18, 2026Updated last week
- ☆15Apr 2, 2025Updated 11 months ago
- Create a citation graph from pubmed data using R☆10Nov 4, 2016Updated 9 years ago
- ALFA: Annotation Landscape for Aligned Reads☆14Jun 30, 2020Updated 5 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆11Nov 9, 2020Updated 5 years ago
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- an open source data platform, developed in the Korcsmaros Group to store, analyze and integrate bioinformatics data☆12Feb 19, 2026Updated last month
- Consensus assembly and variant calling workflow.☆12May 26, 2015Updated 10 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Workflows I find helpful for fungal genome annotation☆21Jun 30, 2023Updated 2 years ago
- ☆14Mar 17, 2026Updated last week
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Aug 6, 2025Updated 7 months ago
- A parallel wrapper for LTR_FINDER☆55Mar 8, 2026Updated 2 weeks ago
- TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.☆12Jun 26, 2018Updated 7 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 9 years ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 5 years ago
- Python package for investigating the structural context of PTMs☆28Jan 9, 2025Updated last year
- A novel management, annotation, and machine learning framework for analyzing cancer mutations☆31Jul 4, 2024Updated last year