robsyme / nf-repeatmaskingLinks
Nextflow workflow for automatic repeat detection, classification and masking
☆13Updated 7 years ago
Alternatives and similar repositories for nf-repeatmasking
Users that are interested in nf-repeatmasking are comparing it to the libraries listed below
Sorting:
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 3 months ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- Fast sequencing data quality metrics☆28Updated 3 weeks ago
- Customer workshop materials☆18Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- Master of Pores 2☆23Updated 10 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆12Updated last month
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 months ago
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated 3 months ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆65Updated 4 months ago