robsyme / nf-repeatmaskingLinks
Nextflow workflow for automatic repeat detection, classification and masking
☆13Updated 7 years ago
Alternatives and similar repositories for nf-repeatmasking
Users that are interested in nf-repeatmasking are comparing it to the libraries listed below
Sorting:
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 4 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Updated 2 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Variant catalogue pipeline☆26Updated 5 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 weeks ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Master of Pores 2☆23Updated 10 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- k-mer similarity analysis pipeline☆23Updated last week
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 2 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Fast sequencing data quality metrics☆28Updated last month
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- ☆23Updated 5 months ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 6 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago