A collection of Groovy classes that provide utility services to nextflow pipelines.
☆13Oct 25, 2022Updated 3 years ago
Alternatives and similar repositories for nextflow-utility-services
Users that are interested in nextflow-utility-services are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- nf-test utility functions☆12Mar 5, 2026Updated 2 weeks ago
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Nextflow language support for Visual Studio Editor☆37Feb 27, 2026Updated 3 weeks ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 6 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆81Oct 7, 2025Updated 5 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆52Feb 5, 2026Updated last month
- Simple test framework for Nextflow pipelines☆178Updated this week
- ☆10Jan 20, 2022Updated 4 years ago
- Nextflow workshop materials November 2025☆18Mar 14, 2026Updated last week
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Jan 5, 2026Updated 2 months ago
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.☆15Updated this week
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 8 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Nov 2, 2024Updated last year
- A Nextflow pipeline for running synteny analysis.☆16Jun 17, 2025Updated 9 months ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆14Sep 5, 2019Updated 6 years ago
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- Python wrapper around Nextflow.☆62Updated this week
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Updated this week
- SQL support plugin for Nextflow☆32Sep 15, 2025Updated 6 months ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 2 years ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆33Dec 1, 2025Updated 3 months ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Nextflow runs monitoring and organisation UI☆77Sep 20, 2024Updated last year
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 2 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆64Mar 3, 2026Updated 2 weeks ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆47Jun 7, 2023Updated 2 years ago
- Test data to be used for automated testing with the nf-core pipelines☆154Updated this week
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated last year
- A tool for creating resource prediction models for scientific workflows☆13Feb 27, 2024Updated 2 years ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated last year
- Grep for FASTQ files☆103Dec 17, 2025Updated 3 months ago
- The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.☆38Apr 13, 2024Updated last year
- Tangle your Org files☆12Feb 5, 2022Updated 4 years ago
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated 3 weeks ago