Midnighter / nextflow-utility-servicesLinks
A collection of Groovy classes that provide utility services to nextflow pipelines.
☆13Updated 3 years ago
Alternatives and similar repositories for nextflow-utility-services
Users that are interested in nextflow-utility-services are comparing it to the libraries listed below
Sorting:
- Customer workshop materials☆18Updated 2 years ago
- Nextflow language support for Visual Studio Editor☆35Updated last week
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated 2 months ago
- Fast sequencing data quality metrics☆31Updated 3 months ago
- A VSCode extension pack for nf-core developers.☆15Updated 10 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆33Updated last month
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆26Updated last month
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last month
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆47Updated last month
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 months ago
- Model files for Sentieon variant callers☆16Updated this week
- Nascent Transcription Processing Pipeline☆22Updated last month
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 6 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 7 months ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Updated last month
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Nextflow Tower CLI tool☆50Updated 2 weeks ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated last month
- Python Primer Design Library☆14Updated last month
- Access nextflow variables from python scripts or notebooks☆20Updated 4 years ago
- Linter rules for Nextflow DSL scripts☆33Updated last month
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- fastest GTF/GFF-to-BED converter chilling around☆30Updated this week