A curated collection of Nextflow implementation patterns
☆372Nov 21, 2023Updated 2 years ago
Alternatives and similar repositories for patterns
Users that are interested in patterns are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A curated list of nextflow based pipelines☆627Jun 23, 2025Updated 11 months ago
- Example Nextflow pipelines and programming techniques☆108May 20, 2026Updated 2 weeks ago
- A DSL for data-driven computational pipelines☆3,409Updated this week
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆249Aug 10, 2025Updated 9 months ago
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Simple test framework for Nextflow pipelines☆187Apr 27, 2026Updated last month
- Nextflow Tower system☆155Jan 30, 2025Updated last year
- Nextflow training material☆248May 16, 2026Updated 3 weeks ago
- Nextflow language support for Visual Studio Editor☆37May 28, 2026Updated last week
- Tips for Nextflow and cheatsheet for channel operation☆79Aug 14, 2024Updated last year
- Python wrapper around Nextflow.☆62May 26, 2026Updated 2 weeks ago
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆416Updated this week
- A proof of concept of RNAseq pipeline☆84May 13, 2026Updated 3 weeks ago
- Nextflow plugin for VIM☆50May 27, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python package with helper tools for the nf-core community.☆311Updated this week
- Config files used to define parameters specific to compute environments at different Institutions☆109Jun 2, 2026Updated last week
- Test data to be used for automated testing with the nf-core pipelines☆163Updated this week
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆134Jan 27, 2020Updated 6 years ago
- Customer workshop materials☆19May 13, 2026Updated 3 weeks ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,459May 20, 2026Updated 2 weeks ago
- Nextflow training material for introductory tutorial☆108May 13, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- SARS-CoV-2 workflow for nanopore sequence data☆42Apr 15, 2026Updated last month
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,307May 12, 2026Updated 3 weeks ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆856May 2, 2026Updated last month
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Mar 24, 2019Updated 7 years ago
- The D4 Quantitative Data Format☆172Nov 28, 2025Updated 6 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆53May 7, 2026Updated last month
- GATK RNA-Seq Variant Calling in Nextflow☆137Dec 14, 2022Updated 3 years ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆192Updated this week
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆250Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Text Only Genome Viewer!☆249May 14, 2026Updated 3 weeks ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- Bioinformatics containers☆793Updated this week
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- The Nextflow language server☆29May 19, 2026Updated 3 weeks ago