guigolab / FA-nfLinks
Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
☆18Updated 3 years ago
Alternatives and similar repositories for FA-nf
Users that are interested in FA-nf are comparing it to the libraries listed below
Sorting:
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- Validate and edit small eukaryotic genome assemblies☆32Updated 2 years ago
- ☆26Updated 4 years ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Influenza genome analysis Nextflow workflow☆24Updated 3 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated last month
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆54Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 3 weeks ago
- Implementation of ToL genome assembly workflows☆24Updated 2 weeks ago
- ☆29Updated 3 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated 2 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 months ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- A Nextflow pipeline for running synteny analysis.☆16Updated 6 months ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago