Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
☆20Feb 28, 2022Updated 4 years ago
Alternatives and similar repositories for FA-nf
Users that are interested in FA-nf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated 2 years ago
- Nextflow Pipelines☆10Aug 15, 2026Updated 2 months ago
- A GUI tools for Gap closed based on assembly graph☆14Nov 4, 2025Updated last year
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated 2 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- ☆21Jul 12, 2026Updated 3 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated last year
- Course homepages for some of the courses given at SciLifeLab☆21Jan 23, 2020Updated 6 years ago
- Importing and manipulating Hi-C data in R☆13Oct 5, 2026Updated last month
- Example of SGTK application for E.coli dataset:☆32Jul 13, 2020Updated 6 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 7 months ago
- ☆10Nov 15, 2025Updated 11 months ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆51May 8, 2026Updated 5 months ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- Chromosome-level synteny plotting using orthologous regions☆33Sep 19, 2024Updated 2 years ago
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆252Aug 10, 2025Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- A collection of modules and sub-workflows for Nextflow☆29Feb 13, 2026Updated 8 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A fully automated gene annotator from RNA-Seq expression data☆62Jul 1, 2023Updated 3 years ago
- Inpactor2: LTR retrotransposon detector and classificator using Deep Learning☆30Jun 17, 2025Updated last year
- Generation and updating of protein families☆23Oct 26, 2026Updated last week
- A tutorial on how to annotate and interpret novel mammalian reference genomes☆34Updated this week
- ☆33Oct 21, 2026Updated 2 weeks ago
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 4 years ago
- ☆11Feb 16, 2021Updated 5 years ago
- Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)☆15Updated this week
- computational tool to identify trasposable element insertions using Hi-C data☆10Sep 17, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆21Apr 24, 2024Updated 2 years ago
- ☆10Sep 4, 2024Updated 2 years ago
- ☆13Mar 8, 2024Updated 2 years ago
- Best-practice analysis pipeline for mapping reads to a (large) collections of genomes☆13Oct 26, 2026Updated last week
- Params validation plugin for Nextflow pipelines☆47Aug 7, 2024Updated 2 years ago
- perSVade: personalized Structural Variation detection☆42Apr 2, 2026Updated 7 months ago
- HiCAT new project☆40May 18, 2025Updated last year