guigolab / FA-nf
Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
☆17Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for FA-nf
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 3 weeks ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- Find Unique genomic Regions☆29Updated this week
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 3 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated this week
- ☆26Updated 3 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- ☆20Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 3 years ago
- An R package to infer and analyze synteny networks from protein sequences☆23Updated last month
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- Yet another Hi-C scaffolding tool☆19Updated last month
- transposable element typing pipeline☆17Updated 8 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆46Updated 5 years ago
- ☆20Updated this week
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆21Updated 2 months ago