Alternatives and similar repositories for nextflow.py:

Users that are interested in nextflow.py are comparing it to the libraries listed below

• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆20Updated 3 months ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆70Updated last week
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆60Updated this week
• nextflow-io / nf-prov
  ☆28Updated last week
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆38Updated last month
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆59Updated this week
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 2 months ago
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆41Updated 3 weeks ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 3 weeks ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 6 months ago
• nf-core / configs
  Config files used to define parameters specific to compute environments at different Institutions
  ☆94Updated this week
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆26Updated 11 months ago
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆83Updated this week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated 4 months ago
• mlafave / sam2pairwise
  sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.
  ☆44Updated 10 years ago
• nf-core / variantbenchmarking
  A nextflow variant benchmarking pipeline - premature
  ☆14Updated last week
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆42Updated last year
• mahesh-panchal / nf-cascade
  A proof of concept daisy-chaining Nextflow workflows
  ☆17Updated last month
• ialbert / bio
  Making bioinformatics fun again
  ☆63Updated 8 months ago
• mckennalab / Circuitseq
  Nanopore Plasmid Sequencing
  ☆32Updated last year
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆72Updated last week
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆59Updated 3 weeks ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆51Updated 3 weeks ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆19Updated last week
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆44Updated 11 months ago
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆32Updated this week
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆61Updated 3 months ago
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆61Updated this week
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆49Updated last month