Alternatives and similar repositories for nextflow.py:

Users that are interested in nextflow.py are comparing it to the libraries listed below

• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆70Updated last week
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆73Updated last week
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last year
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 2 months ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 6 months ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆20Updated 3 months ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 3 weeks ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆42Updated last year
• dbikard / genomenotebook
  A genome browser in your Jupyter notebook
  ☆30Updated last month
• nf-core / variantbenchmarking
  A nextflow variant benchmarking pipeline - premature
  ☆14Updated this week
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated last month
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆60Updated this week
• nextflow-io / nfcamp-tutorial
  A tutorial for DLS-2 migration
  ☆29Updated 5 years ago
• alexcoppe / bio-dockers
  Bio-dockers: dockerized bioinformatic tools
  ☆32Updated last month
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆49Updated 2 months ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆59Updated this week
• broadinstitute / viral-pipelines
  viral-ngs: complete pipelines
  ☆61Updated this week
• foerstner-lab / gffpandas
  Parse GFF3 into Pandas dataframes
  ☆26Updated 11 months ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆126Updated last year
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated 4 months ago
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆21Updated last week
• nextflow-io / nf-prov
  ☆28Updated last week
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆38Updated last month
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated last year
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• developerpiru / BEAVR
  BEAVR: A Browser-based tool for the Exploration And Visualization of RNAseq data
  ☆25Updated 3 years ago
• panoptes-organization / panoptes
  Monitor computational workflows in real time
  ☆70Updated 8 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆20Updated last week
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆74Updated 3 weeks ago
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆58Updated 4 years ago