qbic-pipelines / rnadeseqView external linksLinks
Differential gene expression analysis and pathway analysis of RNAseq data
☆32Jul 3, 2025Updated 7 months ago
Alternatives and similar repositories for rnadeseq
Users that are interested in rnadeseq are comparing it to the libraries listed below
Sorting:
- Nextflow pipeline wrapper for executing Cell Ranger☆13Mar 8, 2022Updated 3 years ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline☆13Dec 2, 2025Updated 2 months ago
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 4 years ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆101Aug 6, 2025Updated 6 months ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 7 years ago
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆15Oct 15, 2025Updated 3 months ago
- A method to improve mappings on circular genomes, using the BWA mapper☆10Mar 4, 2022Updated 3 years ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 2 years ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Jan 15, 2026Updated 3 weeks ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Sep 22, 2022Updated 3 years ago
- ☆16Jun 17, 2021Updated 4 years ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆170Jan 9, 2026Updated last month
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Nov 20, 2025Updated 2 months ago
- FunctionaL Omics Processing platform☆13Jul 25, 2024Updated last year
- A repo with just adapter sequences☆15Jul 7, 2025Updated 7 months ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆109Nov 21, 2025Updated 2 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Feb 4, 2026Updated last week
- Linter rules for Nextflow DSL scripts☆34Feb 2, 2026Updated last week
- Lint Nextflow pipelines in Python.☆11Jan 23, 2025Updated last year
- Testing building mulled containers for multi-requirement tools.☆83Updated this week
- Demultiplexing pipeline for sequencing data☆52Feb 5, 2026Updated last week
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Somatic point mutation caller☆17Jul 8, 2016Updated 9 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Nov 14, 2025Updated 3 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆155Jan 22, 2026Updated 3 weeks ago
- Correcting errors in noisy long reads using variation graphs☆50Nov 17, 2022Updated 3 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Python package with helper tools for the nf-core community.☆291Updated this week
- Nextflow language support for Visual Studio Editor☆37Jan 23, 2026Updated 3 weeks ago
- Data Science Operations (dso) command line tool☆46Sep 8, 2025Updated 5 months ago
- Simple test framework for Nextflow pipelines☆176Feb 5, 2026Updated last week
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 4 years ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago