qbic-pipelines / rnadeseq
Differential gene expression analysis and pathway analysis of RNAseq data
☆32Updated this week
Related projects ⓘ
Alternatives and complementary repositories for rnadeseq
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆27Updated last month
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 weeks ago
- interactive plots for differential expression analysis☆25Updated 2 months ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 months ago
- Genomic data interpretation and visualization Workshop☆18Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 4 months ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- DriverPower☆26Updated 5 months ago
- ☆9Updated 4 years ago
- Merge fastq files split over lanes☆19Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated 11 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- R package for DNA methylation analysis☆17Updated 3 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆33Updated 6 months ago
- ☆21Updated 2 weeks ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 3 weeks ago
- Nascent Transcription Processing Pipeline☆18Updated this week
- ☆23Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- A command line tool to compute mapping statistics from a BAM file☆22Updated 2 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated last year
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago