qbic-pipelines / rnadeseq
Differential gene expression analysis and pathway analysis of RNAseq data
☆32Updated this week
Alternatives and similar repositories for rnadeseq:
Users that are interested in rnadeseq are comparing it to the libraries listed below
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- interactive plots for differential expression analysis☆32Updated last month
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last month
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 2 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- Codes and Data for FFPEsig manuscript☆16Updated last year
- ☆33Updated 3 years ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 2 weeks ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated 4 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 10 months ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 3 weeks ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- Create QC and summary reports for Alevin output☆32Updated 3 weeks ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆37Updated last year
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated last week
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ☆22Updated 4 months ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 5 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated last month
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- Motif manipulation functions for R.☆28Updated 2 weeks ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago