qbic-pipelines / rnadeseq
Differential gene expression analysis and pathway analysis of RNAseq data
☆32Updated 2 months ago
Alternatives and similar repositories for rnadeseq:
Users that are interested in rnadeseq are comparing it to the libraries listed below
- interactive plots for differential expression analysis☆29Updated this week
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 2 weeks ago
- Differential ATAC-seq toolkit☆27Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 9 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 7 months ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 2 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- DriverPower☆26Updated last month
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated last month
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 11 months ago
- a set of NGS pipelines☆24Updated this week
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Genomic Association Tester☆30Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated 2 months ago
- Version II of Mandalorion☆32Updated 6 years ago
- ☆33Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago