A GitHub action to install Nextflow
☆29Apr 7, 2026Updated this week
Alternatives and similar repositories for setup-nextflow
Users that are interested in setup-nextflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated last year
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Nov 20, 2025Updated 4 months ago
- Nextflow language support for Visual Studio Editor☆37Updated this week
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated last year
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆34Apr 2, 2026Updated last week
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 4 months ago
- nf-test utility functions☆12Mar 5, 2026Updated last month
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated 10 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Apr 2, 2026Updated last week
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆26Mar 16, 2026Updated 3 weeks ago
- GitHub Action to Sync subtrees with a source project☆11Oct 16, 2019Updated 6 years ago
- gatk4 RNA variant calling pipeline☆59Mar 26, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Test data to be used for automated testing with the nf-core pipelines☆157Apr 2, 2026Updated last week
- Builds a PEP from SRA or GEO accessions☆55Mar 25, 2026Updated 2 weeks ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 4 years ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Jan 15, 2026Updated 2 months ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆14Feb 17, 2026Updated last month
- Parallelised and automated construction of metagenomic classifier databases of different tools☆20Updated this week
- Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data☆14Mar 12, 2024Updated 2 years ago
- Demultiplexing pipeline for sequencing data☆54Mar 26, 2026Updated 2 weeks ago
- Simple test framework for Nextflow pipelines☆182Mar 19, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 3 years ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Nov 20, 2025Updated 4 months ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆31Feb 28, 2026Updated last month
- Precision HLA typing from next-generation sequencing data☆79Apr 2, 2026Updated last week
- Customer workshop materials☆19Apr 2, 2026Updated last week
- ☆20Nov 21, 2025Updated 4 months ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Apr 1, 2026Updated last week
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆42Apr 1, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Protein 3D structure prediction pipeline☆104Mar 27, 2026Updated 2 weeks ago
- A proof of concept daisy-chaining Nextflow workflows☆31Mar 10, 2026Updated last month
- Docker containers for bioinformatics with a small footprint☆23Mar 19, 2026Updated 3 weeks ago
- Slides and Notebooks for scverse 2024☆17Sep 24, 2024Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆91Updated this week
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆51Apr 1, 2026Updated last week