nf-core / setup-nextflowLinks
A GitHub action to install Nextflow
☆22Updated last week
Alternatives and similar repositories for setup-nextflow
Users that are interested in setup-nextflow are comparing it to the libraries listed below
Sorting:
- A VSCode extension pack for nf-core developers.☆15Updated 9 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆47Updated 3 weeks ago
- Demultiplexing pipeline for sequencing data☆51Updated this week
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Updated 2 months ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated last week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated 3 weeks ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆40Updated this week
- TIDDIT - structural variant calling☆78Updated 2 weeks ago
- A python package and a set of shell commands to handle GTF files☆50Updated last week
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- BigWig and BAM utilities☆99Updated last year
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆76Updated 2 months ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆87Updated this week
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆91Updated this week
- This repository hosts a large collection of Nextflow snippets☆56Updated 11 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆131Updated 2 months ago
- A collection of modules and sub-workflows for Nextflow☆28Updated last month
- Algorithm to detect germline and de novo transposon insertions☆31Updated 4 months ago
- reference-free transcriptome assembly for short and long reads☆107Updated last year
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆97Updated last week
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Grep for FASTQ files☆103Updated last week
- Building SuperTranscripts: A linear representation of transcriptome data☆68Updated 4 years ago
- Precision HLA typing from next-generation sequencing data☆75Updated last week
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated last week
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 3 weeks ago
- ☆74Updated this week