MHH-RCUG / nf_wochenendeLinks
A nextflow version of the Wochenende reference metagenome binning and visualization pipeline
☆14Updated 7 months ago
Alternatives and similar repositories for nf_wochenende
Users that are interested in nf_wochenende are comparing it to the libraries listed below
Sorting:
- Raspir, the rare species identifier☆11Updated last year
- Neptune: Genomic Signature Discovery☆20Updated 7 months ago
- consensus approach for community profiling with nanopore amplicon sequencing data☆14Updated 9 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 4 years ago
- MAG Circularization Method☆33Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Microbial agile accurate SNP Typer☆30Updated last year
- De novo VIral Genome Annotator☆23Updated 10 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆16Updated 9 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 5 months ago
- Dadaist2 🟨 Highway to R☆13Updated 4 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- MAGScoT - a MAG scoring and refinement tool☆35Updated 9 months ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- transposable element typing pipeline☆18Updated last year
- Resolving Species Level Classification Using Emu☆13Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- Quality control plotting for long reads☆10Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆9Updated 4 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- ☆14Updated 4 years ago
- Pan-genome Analysis☆12Updated 2 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 3 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last month
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago