comprna / radian
Nanopore direct RNA basecaller
☆11Updated 2 years ago
Alternatives and similar repositories for radian:
Users that are interested in radian are comparing it to the libraries listed below
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆14Updated this week
- crab go snap snap☆37Updated last month
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆22Updated this week
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated 11 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 7 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated 11 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆34Updated 4 months ago
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆15Updated last month
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 8 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 3 weeks ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- Linear-time de novo Long Read Assembler☆39Updated 2 months ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆14Updated 10 months ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago
- ☆16Updated 11 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)☆20Updated 8 months ago
- GUI for inspecting POD5 files☆26Updated 3 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- A tool to detect structural variant☆18Updated 2 years ago
- ☆9Updated 3 years ago
- A simple toolkit for manipulating nanopore signal data☆18Updated 6 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 8 months ago