Alternatives and similar repositories for radian

Users that are interested in radian are comparing it to the libraries listed below

• imsuneth / realfreq
  Realtime base modification frequency tool
  ☆11Updated 4 months ago
• lrslab / nanoCEM
  "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.
  ☆16Updated 4 months ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆41Updated last year
• pkubioinformatics / nanoreviser
  NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm
  ☆28Updated last year
• PengNi / deepsignal2
  ☆29Updated last year
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated last year
• UCSC-nanopore-cgl / margin
  ☆32Updated 2 years ago
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆19Updated last year
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆57Updated this week
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆35Updated 6 years ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last month
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆40Updated last month
• dvdylus / read2tree
  ☆20Updated 3 years ago
• hitbc / gcSV
  ☆21Updated 6 months ago
• mcfrith / tandem-genotypes
  ☆48Updated last year
• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆35Updated last month
• kensung-lab / INSurVeyor
  An insertion caller for Illumina paired-end WGS data.
  ☆23Updated last week
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 5 months ago
• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆20Updated this week
• davidemms / STRIDE
  STRIDE: Species Tree Root Inference from Gene Duplication Events
  ☆12Updated 7 years ago
• lh3 / minisplice
  Scoring GT/AG sites for improving spliced alignment
  ☆45Updated last month
• IGDRion / ANNEXA
  Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).
  ☆15Updated last month
• LabShengLi / nanome
  NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)
  ☆32Updated last month
• novoalab / m6ABasecaller
  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…
  ☆17Updated 6 months ago
• comprna / riser
  Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing
  ☆15Updated this week
• novoalab / SeqTagger
  Super-fast and accurate demultiplexing of direct RNA-seq runs.
  ☆16Updated last month
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆35Updated last year
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆68Updated last week
• yywan0913 / SVhawkeye
  ☆32Updated last year
• welch-lab / SquiggleNet
  ☆21Updated last week