Alternatives and similar repositories for fast5_research

Users that are interested in fast5_research are comparing it to the libraries listed below

• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆48Updated 2 years ago
• TheJacksonLaboratory / Picky
  Structural Variants Pipeline for Long Reads
  ☆44Updated 7 years ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆103Updated 4 years ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆109Updated 2 weeks ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆51Updated 4 years ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆116Updated this week
• kishwarshafin / helen
  H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
  ☆72Updated 4 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 5 months ago
• MeHelmy / princess
  ☆81Updated 6 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆56Updated 3 years ago
• nanoporetech / pyguppyclient
  Python client library for Guppy
  ☆32Updated 3 years ago
• holtjma / fmlrc
  a long-read error correction tool using the multi-string Burrows Wheeler Transform
  ☆45Updated 5 years ago
• shilpagarg / DipAsm
  ☆78Updated 5 years ago
• mcfrith / tandem-genotypes
  ☆48Updated last year
• epi2me-labs / modbam2bed
  ☆49Updated last year
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆46Updated 4 years ago
• KolmogorovLab / Wakhan
  Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
  ☆57Updated this week
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆57Updated 2 years ago
• nanoporetech / flappie
  Flip-flop basecaller for Oxford Nanopore reads
  ☆100Updated 3 years ago
• davidebolo1993 / VISOR
  VarIant SimulatOR for short, long and linked reads
  ☆49Updated 11 months ago
• WGLab / RepeatHMM
  a hidden Markov model to infer simple repeats from genome sequences
  ☆37Updated 4 years ago
• twolinin / longphase
  ☆117Updated 3 weeks ago
• LooseLab / bulkvis
  ☆49Updated 10 months ago
• ryanlayer / stix
  Structural Variant Index
  ☆75Updated 9 months ago
• al-mcintyre / mCaller
  A python program to call methylation (m6A in DNA) from nanopore signal data
  ☆47Updated 4 years ago
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆32Updated 3 weeks ago
• shilpagarg / WHdenovo
  ☆46Updated 5 years ago