Fast5 API provided by ONT Research
☆21Mar 17, 2022Updated 4 years ago
Alternatives and similar repositories for fast5_research
Users that are interested in fast5_research are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 8 years ago
- Tools and software library developed by the ONT Applications group☆64Jan 22, 2021Updated 5 years ago
- ☆27Nov 14, 2025Updated 4 months ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆32Dec 15, 2020Updated 5 years ago
- Oxford Nanopore Technologies fast5 API software☆154Feb 27, 2024Updated 2 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234May 4, 2023Updated 2 years ago
- Training models for basecalling Oxford Nanopore reads☆115Jan 13, 2022Updated 4 years ago
- fork of dorado that supports S/BLOW5☆12Jan 8, 2026Updated 2 months ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Feb 16, 2024Updated 2 years ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- NanopolishComp is a Python3 package for downstream analyses of Nanopolish output files☆10Dec 22, 2020Updated 5 years ago
- A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing effici…☆13Feb 13, 2019Updated 7 years ago
- Structural Variants Pipeline for Long Reads☆44Jul 17, 2018Updated 7 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Sep 4, 2017Updated 8 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated last month
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- A versatile sequenced read processor for nanopore direct RNA sequencing☆82May 24, 2020Updated 5 years ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- ALFA: Annotation Landscape for Aligned Reads☆14Jun 30, 2020Updated 5 years ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆48Oct 16, 2020Updated 5 years ago
- ☆17Apr 1, 2018Updated 7 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 3 weeks ago
- Structural variant caller for low-depth long-read sequencing data☆48Feb 5, 2026Updated last month
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- Analysis components from Oxford Nanopore Research☆97Sep 4, 2024Updated last year
- C++ library for parsing several formats in bioinformatics☆10May 18, 2023Updated 2 years ago
- A neural network model to predict splice site usage and splicing-altering mutations☆15Jul 24, 2025Updated 8 months ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 2 years ago
- Hybrid Assembler for Plasmids☆10Jul 28, 2022Updated 3 years ago
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆26Aug 31, 2022Updated 3 years ago
- a toolkit for working with Oxford nanopore data☆242Feb 6, 2023Updated 3 years ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 9 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Mar 12, 2026Updated last week