nanoporetech / fast5_researchLinks
Fast5 API provided by ONT Research
☆22Updated 3 years ago
Alternatives and similar repositories for fast5_research
Users that are interested in fast5_research are comparing it to the libraries listed below
Sorting:
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- ☆49Updated last year
- ☆83Updated 10 months ago
- vcfdist: Accurately benchmarking phased variant calls☆85Updated 3 months ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated this week
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆36Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆90Updated 3 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- Python client library for Guppy☆32Updated 3 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 months ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆99Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆34Updated 2 months ago
- Variant calling tool for long-read sequencing data☆116Updated 9 months ago
- ☆78Updated 5 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- This is an updated mirror of the original PacBio Read Simulator☆39Updated 7 years ago
- SV caller for nanopore data☆92Updated 5 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- ☆46Updated 5 years ago
- ☆121Updated last month
- Error correction of ONT transcript reads☆58Updated 2 years ago