Alternatives and similar repositories for fast5_research:

Users that are interested in fast5_research are comparing it to the libraries listed below

• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆99Updated 3 years ago
• TheJacksonLaboratory / Picky
  Structural Variants Pipeline for Long Reads
  ☆44Updated 6 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆46Updated last year
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆59Updated last year
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆111Updated 2 months ago
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated last year
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆50Updated 2 years ago
• WGLab / RepeatHMM
  a hidden Markov model to infer simple repeats from genome sequences
  ☆36Updated 4 years ago
• rrwick / MinION-desktop
  Scripts and programs for the Holt Lab's MinION desktop
  ☆32Updated 4 years ago
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆43Updated 5 years ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• LooseLab / bulkvis
  ☆46Updated 3 months ago
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆28Updated last week
• a-slide / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆34Updated 3 years ago
• nanoporetech / pyguppyclient
  Python client library for Guppy
  ☆31Updated 2 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆96Updated 3 weeks ago
• mcfrith / tandem-genotypes
  ☆48Updated 7 months ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• comprna / RATTLE
  Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
  ☆57Updated last year
• epi2me-labs / modbam2bed
  ☆48Updated 5 months ago
• MeHelmy / princess
  ☆79Updated 9 months ago
• PacificBiosciences / sv-benchmark
  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
  ☆48Updated 4 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆100Updated 3 weeks ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 2 years ago
• Maggi-Chen / DeBreak
  Structural variant caller for real-time long-read sequencing data
  ☆56Updated 2 years ago
• dayzerodx / counterr
  ☆31Updated 9 months ago
• shilpagarg / WHdenovo
  ☆47Updated 4 years ago