aquaskyline / ClairLinks
☆10Updated last year
Alternatives and similar repositories for Clair
Users that are interested in Clair are comparing it to the libraries listed below
Sorting:
- ☆12Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- ☆13Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated last year
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- DNN-based small variant caller☆12Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated last year
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- ☆14Updated 2 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- ☆16Updated 3 years ago
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Recommended Graphtyper pipelines☆15Updated 4 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- fork of dorado that supports S/BLOW5☆12Updated last month
- Tandem repeat genotyping with long reads☆32Updated 2 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year