☆20Mar 13, 2026Updated 6 months ago
Alternatives and similar repositories for kled
Users that are interested in kled are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SVHunter is a long-read-based structural variation detection through transformer model. SVHunter can detect and genotype DEL/INS/DUP/INV/…☆16Mar 31, 2025Updated last year
- Pangenome-based structural variation caller☆41Sep 24, 2026Updated 2 weeks ago
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Apr 17, 2026Updated 5 months ago
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆16May 14, 2026Updated 4 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆111Jun 25, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆42May 19, 2026Updated 4 months ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- Color Genomics Structural Variant Simulator☆11Sep 6, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆13Nov 15, 2017Updated 8 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 6 months ago
- A tool for motif annotation and visualization in tandem repeats.☆15May 26, 2025Updated last year
- ☆38Apr 13, 2024Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- VNTR annotation using motif selection☆44Sep 21, 2026Updated 3 weeks ago
- ☆133Updated this week
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Dec 11, 2022Updated 3 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆52Feb 3, 2021Updated 5 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Oct 3, 2026Updated last week
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- A list of software for pangenomics☆200Sep 16, 2026Updated 3 weeks ago
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- Extract methylation calls from long reads (ONT/ PacBio)☆25Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An insertion caller for Illumina paired-end WGS data.☆26Aug 22, 2025Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 7 months ago
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆25Jul 30, 2026Updated 2 months ago
- Learn Julia in one workday!☆13Jan 7, 2020Updated 6 years ago
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 2 months ago
- assembly evaluation tool☆36May 11, 2022Updated 4 years ago