Alternatives and similar repositories for spoa-rs:

Users that are interested in spoa-rs are comparing it to the libraries listed below

• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆27Updated 6 months ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated 9 months ago
• pjedge / rust-spoa
  Rust crate with bindings and interface to the SPOA library for generating consensus sequences.
  ☆10Updated 5 years ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆23Updated 2 weeks ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆22Updated this week
• MoinSebi / gfa2bin
  ☆14Updated last month
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated 10 months ago
• Singular-Genomics / singular-demux
  Singular Genomics Demultiplexing Tool
  ☆16Updated 10 months ago
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆17Updated last year
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆18Updated 4 years ago
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated 3 months ago
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated last year
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆23Updated 3 months ago
• chfi / gfainject
  ☆14Updated last year
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆19Updated 2 months ago
• AlgoLab / rs-vgaligner
  Rust implementation of ekg's dozyg
  ☆9Updated 2 years ago
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆12Updated last month
• MoinSebi / gSV
  ☆11Updated 2 years ago
• chfi / pafview
  ☆17Updated this week
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆22Updated last week
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• tanghaibao / rust-wfa2
  Rust binding for WFA2-lib
  ☆10Updated 2 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 5 years ago
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆18Updated 3 years ago
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆18Updated 2 years ago
• ekg / dozyg
  sequence to graph mapper
  ☆11Updated 3 years ago
• natir / rustyread
  A long read simulator based on badread idea
  ☆20Updated 2 years ago
• ratschlab / Project2020-seq-tensor-sketching
  ☆8Updated 3 years ago
• natir / nuc2bit
  ☆14Updated 4 years ago
• 6br / hgb
  A read alignment visualization library for long reads
  ☆11Updated 2 years ago