A rust wrapper for the spoa C++ partial order alignment library
☆10Jun 11, 2025Updated 9 months ago
Alternatives and similar repositories for spoa-rs
Users that are interested in spoa-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 3 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- GBZ file format for pangenome graphs☆46Mar 18, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last month
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆46May 10, 2023Updated 2 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 6 years ago
- ☆24Aug 25, 2025Updated 7 months ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 2 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆12Sep 7, 2019Updated 6 years ago
- Drug Resistance Prediction with Reference Graphs☆21Oct 23, 2025Updated 5 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆136Feb 22, 2026Updated last month
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 6 years ago
- PCA in rust☆16Jul 30, 2023Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 6 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- a lexicographically-based GTF/GFF sorter☆38Mar 16, 2026Updated last week
- ☆19May 10, 2023Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- String algorithm visualizations☆13Feb 7, 2023Updated 3 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 3 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated last month
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year