brettChapman / paf2pav
☆9Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for paf2pav
- convert variation graph alignments to coverage maps over nodes☆21Updated last week
- the pangenome graph evaluator☆23Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆24Updated last week
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Statistics and analysis for variation graphs☆31Updated this week
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆13Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 9 months ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆33Updated last month
- Generate interactive dotplot from mummer4 output using plotly☆25Updated 4 years ago
- an interactive web viewer for reference pangenome graphs☆23Updated last week
- ☆21Updated last month
- ☆24Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated 2 months ago
- A read alignment visualization library for long reads☆11Updated 2 years ago
- implicit pangenome graph☆44Updated 2 weeks ago
- convert CHAIN format to PAF format☆13Updated 6 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- ☆39Updated this week
- Test sets and pipeline scripts for pan-genomic graph analysis☆16Updated 3 months ago
- Convert HAL to VG☆21Updated 3 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated last week
- ☆17Updated last month
- A comparative genome scaffolding tool☆17Updated 6 years ago
- ☆16Updated 2 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆34Updated 2 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆15Updated 4 months ago
- assembly evaluation tool☆34Updated 2 years ago