brettChapman / paf2pavView external linksLinks
☆10Feb 20, 2024Updated last year
Alternatives and similar repositories for paf2pav
Users that are interested in paf2pav are comparing it to the libraries listed below
Sorting:
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- convert PAF format to CHAIN format☆34May 14, 2025Updated 9 months ago
- Everything but the kitchen sink☆12Feb 6, 2025Updated last year
- ☆13Updated this week
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- generating hardware accelerators for pangenomic graph queries☆39Updated this week
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Aug 26, 2025Updated 5 months ago
- ☆18May 10, 2023Updated 2 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 2, 2025Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆17Aug 27, 2024Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Oct 13, 2024Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 8 months ago
- base-level dotplots from PAF alignments☆30Sep 18, 2025Updated 4 months ago
- implicit pangenome graph☆88Feb 6, 2026Updated last week
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆47Jun 7, 2023Updated 2 years ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 2 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 8 months ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- A mosaic genome painting tool for plant genomes☆18Mar 4, 2025Updated 11 months ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 2 months ago
- A simple C++17 header-only library for generating SVG plots☆10Mar 17, 2024Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆75Aug 2, 2022Updated 3 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 3 weeks ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- A toolkit for exploring regions of variation in pangenomes☆13Jan 30, 2026Updated 2 weeks ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- Assemblies from HPP Year 1 production☆80May 9, 2023Updated 2 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year