sriramlab / ArchIELinks
A statistical framework for reference-free inference of archaic local ancestry
☆16Updated 5 years ago
Alternatives and similar repositories for ArchIE
Users that are interested in ArchIE are comparing it to the libraries listed below
Sorting:
- Infer demographic history with the Moran model☆48Updated 3 months ago
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago
- ☆31Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- ☆13Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆53Updated 3 months ago
- ☆43Updated 4 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆17Updated last month
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- Sampling and inference of genealogies with recombination☆41Updated 3 months ago
- ☆24Updated 8 years ago
- A package for population structure inference from RAD-seq data☆34Updated 4 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆17Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Updated 4 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 7 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆15Updated 6 months ago
- WinPCA. A package for windowed principal component analysis.☆35Updated last week
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago