MaoYafei / TREEasy
A tool to infer species tree and phylogenetic network from multilocus data
☆32Updated 4 years ago
Alternatives and similar repositories for TREEasy:
Users that are interested in TREEasy are comparing it to the libraries listed below
- ☆39Updated last year
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- Code for computing various support scores for internodes☆19Updated 5 years ago
- Quantifying Introgression via Branch Lengths☆50Updated 2 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- ☆19Updated 2 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆14Updated 3 months ago
- ☆18Updated 4 years ago
- ☆32Updated 4 years ago
- R and Python scripts used to simulate gene trees under coalescent model and detect gene flow using triple frequency☆10Updated 2 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆47Updated last year
- Convergent substitution detection tool based on the PCOC model☆30Updated 3 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated 11 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆34Updated last year
- Tutorial about R package PopGenome☆41Updated 6 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last week
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- ☆18Updated last year
- Automatic evaluation of HGTs☆28Updated 2 months ago
- ☆18Updated last year
- A toolkit for automated local phylogenomic analyses, or ALPHA☆12Updated 5 years ago
- ☆22Updated 11 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 2 months ago
- Multi-genome synteny block visualization tool☆33Updated 2 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 6 months ago