MaoYafei / TREEasyLinks
A tool to infer species tree and phylogenetic network from multilocus data
☆32Updated 5 years ago
Alternatives and similar repositories for TREEasy
Users that are interested in TREEasy are comparing it to the libraries listed below
Sorting:
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆42Updated 2 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Multi-genome synteny block visualization tool☆47Updated 8 months ago
- Quantifying Introgression via Branch Lengths☆54Updated 3 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- ☆33Updated 4 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆35Updated 2 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 9 months ago
- ☆32Updated 6 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Updated 11 years ago
- Likelihood-based Selective Sweep Detection☆40Updated last year
- ContScout sequence contamination filter tool☆23Updated 4 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆31Updated last month
- Infer demographic history with the Moran model☆48Updated 3 months ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆21Updated last year
- Tool for fully-automated inference of species trees from raw genome assemblies☆40Updated 4 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 8 months ago
- ☆23Updated 3 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- Portable solution to generate genome alignment chains using lastz☆59Updated 2 weeks ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Code for computing various support scores for internodes☆19Updated 5 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆20Updated 4 months ago
- Automatically exported from code.google.com/p/densitree☆28Updated 2 months ago
- A genome assembly assessment pipeline.☆37Updated last year