MaoYafei / TREEasyLinks
A tool to infer species tree and phylogenetic network from multilocus data
☆32Updated 5 years ago
Alternatives and similar repositories for TREEasy
Users that are interested in TREEasy are comparing it to the libraries listed below
Sorting:
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 6 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated 2 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- ☆41Updated last year
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Genome Annotation Pipeline☆36Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated last year
- ☆32Updated 4 years ago
- ☆31Updated 5 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 7 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Code for computing various support scores for internodes☆19Updated 5 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- ☆15Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆54Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated this week
- ☆22Updated 3 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated 11 months ago
- Helper scripts for processing and visualization of phylogenetics datasets☆29Updated last year
- A toolkit for automated local phylogenomic analyses, or ALPHA☆13Updated 5 years ago
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated last week
- ☆41Updated 2 years ago
- ContScout sequence contamination filter tool☆23Updated 3 months ago
- ☆26Updated 6 months ago