schneebergerlab / findGSE
findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model.
☆35Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for findGSE
- scripts for the project of seven thaliana genomes assembly☆37Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆35Updated last year
- ☆32Updated 3 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆67Updated 3 years ago
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated 7 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated last year
- Make Pseudo-Reference Genome from VCF/BCF☆13Updated 4 years ago
- finshingTool☆54Updated 7 years ago
- calling SVs from Blasr contig level alignments☆53Updated 6 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆25Updated 2 weeks ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆42Updated 9 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆37Updated last week
- ☆21Updated 5 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆32Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆30Updated 8 months ago
- ☆16Updated last month
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Easily construct the ML species tree with single-copy gene shared by different species.☆25Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆26Updated 3 years ago
- A (very) simple script to QC Hi-C data.☆25Updated last year
- ☆42Updated 7 years ago
- Tutorial about R package PopGenome☆40Updated 5 years ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- A box of genomics tools☆21Updated 4 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆50Updated last year