findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model.
☆38Jan 16, 2024Updated 2 years ago
Alternatives and similar repositories for findGSE
Users that are interested in findGSE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆16Jul 30, 2026Updated last month
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 3 years ago
- defusion☆14Aug 24, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated 2 months ago
- Synteny Mapping and Analysis Program☆30Aug 27, 2026Updated 3 weeks ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆96Jan 14, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 8 months ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆42Jul 11, 2025Updated last year
- Multi-genome synteny block visualization tool☆66Updated this week
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Dec 19, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Multivariate vIsualisatioN and OuTlier Analysis Using R☆15Apr 8, 2023Updated 3 years ago
- RelocaTE2☆19Oct 6, 2023Updated 2 years ago
- Fast genome analysis from unassembled short reads☆328Apr 8, 2024Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆22Jul 26, 2023Updated 3 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 5 months ago
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- Domain based annotation of transposable elements☆25Jul 21, 2026Updated 2 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Nov 23, 2020Updated 5 years ago
- B73Ab10 genome assembly methods☆17Jan 21, 2022Updated 4 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last week
- ☆42May 19, 2025Updated last year
- TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly☆28Jan 2, 2022Updated 4 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 5 years ago
- RepeatIdentifier☆75Mar 19, 2025Updated last year
- Detecting multi-genome synteny using minimizer graph mapping☆116Updated this week
- Synteny and Rearrangement Identifier☆491Jul 1, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Programs implementing the trio-binning genome assembly method☆22Nov 22, 2023Updated 2 years ago
- Nextflow pipeline for scaffolding genome assemblies with Hi-C reads☆16Nov 5, 2025Updated 10 months ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated this week
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆302Updated this week
- k-mer based assembly evaluation☆355Jul 6, 2026Updated 2 months ago
- ☆20Apr 24, 2022Updated 4 years ago