schneebergerlab / findGSELinks
findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model.
☆38Updated last year
Alternatives and similar repositories for findGSE
Users that are interested in findGSE are comparing it to the libraries listed below
Sorting:
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Infer demographic history with the Moran model☆48Updated 3 months ago
- finshingTool☆54Updated 8 years ago
- ☆26Updated 7 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- ☆44Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- TGS scaffolding☆47Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆32Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆53Updated 3 months ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 8 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated last month
- A (very) simple script to QC Hi-C data.☆26Updated 9 months ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆61Updated 7 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- A program to call variants from genome alignment☆81Updated 5 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆20Updated 4 months ago