schneebergerlab / findGSE
findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model.
☆37Updated last year
Alternatives and similar repositories for findGSE:
Users that are interested in findGSE are comparing it to the libraries listed below
- ☆32Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Transposable Elements MOvement detection using LOng reads☆21Updated 3 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- ☆43Updated 8 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- ☆24Updated 3 weeks ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated last month
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- finshingTool☆55Updated 8 years ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆71Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- A (very) simple script to QC Hi-C data.☆25Updated 2 months ago
- ☆21Updated 5 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆32Updated last month
- Population genetics analyses from NGS data☆25Updated 4 years ago
- info and docs for the Wright Lab☆14Updated 9 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 5 months ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- Conditional Reciprocal Best Blast☆42Updated 7 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated last month