Some useful gadgets
☆12Mar 14, 2022Updated 4 years ago
Alternatives and similar repositories for naughty_monkey
Users that are interested in naughty_monkey are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆14Mar 11, 2019Updated 7 years ago
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 7 months ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- Convergence event counting and probability calculation according to Zou and Zhang, 2015, Mol. Biol. Evol.☆11Mar 17, 2021Updated 5 years ago
- Detecting differentially interacting genomic regions from Hi-C contact maps☆12Mar 11, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- ☆25Nov 29, 2022Updated 3 years ago
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 4 years ago
- A pipeline to identify gene family using mutiple tools and scripts.☆12Aug 22, 2021Updated 5 years ago
- A pipeline for processing data in a comparative genomics project.☆10Jan 18, 2021Updated 5 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- ☆12Feb 16, 2026Updated 8 months ago
- A integrated pipeline for estimating Convergent accelerated evolutionary conserved non-coding elements☆21Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆32Sep 22, 2026Updated last month
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- read and analyse RepeatMasker output☆26May 22, 2023Updated 3 years ago
- ☆16Oct 8, 2026Updated 3 weeks ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 6 years ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated last year
- Automated pipeline for enrichment analysis in non-model organisms !☆17Feb 8, 2026Updated 8 months ago
- A genome-wide IM blockwise likelihood estimation toolkit☆20Jun 24, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Assemble and following pipeline used in wisent genome paper.☆18Dec 23, 2016Updated 9 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆18Jan 3, 2026Updated 10 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Jul 21, 2021Updated 5 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆40Updated this week
- ☆10Feb 27, 2026Updated 8 months ago
- Analyzing combinations of codon substitution histories☆48Oct 26, 2026Updated last week
- R package for comparison of synteny conservation at the genome-wide scale.☆17Jun 6, 2024Updated 2 years ago
- ☆10Jun 13, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analyses of sex chromosome evolution in songbirds☆18Jun 15, 2019Updated 7 years ago
- Scripts that used in our chicken T2T manuscript.☆22Jan 14, 2026Updated 9 months ago
- ☆15Nov 25, 2019Updated 6 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆87Jul 8, 2026Updated 3 months ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 7 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Feb 22, 2023Updated 3 years ago