Alternatives and similar repositories for naughty_monkey

Users that are interested in naughty_monkey are comparing it to the libraries listed below

• jingwanglab / Populus_superpangenome
  Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …
  ☆17Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆45Updated last year
• sjteresi / TE_Density
  Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…
  ☆35Updated last year
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆22Updated 2 years ago
• ShiuLab / PseudogenePipeline
  ☆41Updated 2 years ago
• lurebgi / BOPsexChr
  Analyses of sex chromosome evolution in songbirds
  ☆16Updated 6 years ago
• LQHHHHH / paml-yn00-run-pipeline
  A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method
  ☆10Updated 10 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆25Updated 9 months ago
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆44Updated 3 months ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆42Updated 4 years ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆20Updated last year
• unavailable-2374 / Genome-Wide-Annotation-Pipeline
  This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.
  ☆29Updated last year
• thamala / PBScan
  Selection outlier scan with population branch statistic
  ☆14Updated last year
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆39Updated 7 years ago
• JM-SONG / GenomeSyn
  ☆26Updated 3 years ago
• jingwanglab / Widespread-linked-selection
  Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.
  ☆11Updated 5 years ago
• rivasiker / autocoalhmm
  Automated pipeline for running CoalHMM
  ☆13Updated 2 years ago
• Zhanmengtao / bin
  scripts
  ☆21Updated 7 years ago
• xjtu-omics / HiCAT
  HiCAT new project
  ☆30Updated 7 months ago
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆25Updated 2 months ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆58Updated last year
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆69Updated 4 years ago
• Immortal2333 / Haplotype_Genome_Assembly
  Genome haplotype assembly and assessment method
  ☆12Updated 2 years ago
• JiangYuLab / CNVcaller
  ☆42Updated last year
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆38Updated 3 years ago
• meiyang12 / Genome-annotation-pipeline
  Genome annotation pipeline
  ☆65Updated last year
• wangyibin / CPhasing
  C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.
  ☆77Updated last week
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆40Updated last year
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆49Updated 3 months ago
• simon19891216 / CentIER
  ☆42Updated 5 months ago