simonhmartin / genomics_generalLinks
General tools for genomic analyses.
☆386Updated 11 months ago
Alternatives and similar repositories for genomics_general
Users that are interested in genomics_general are comparing it to the libraries listed below
Sorting:
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆327Updated 2 years ago
- Synteny and Rearrangement Identifier☆447Updated 9 months ago
- Extensive de-novo TE Annotator☆429Updated 4 months ago
- quality filtering tool for long reads☆389Updated 4 months ago
- Tool to plot synteny and structural rearrangements between genomes☆340Updated 10 months ago
- Tutorials on phylogenetic and phylogenomic inference☆393Updated 2 years ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆276Updated 4 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆376Updated 3 years ago
- Fast and accurate de novo assembler for long reads☆398Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆554Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆195Updated 2 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215Updated 7 months ago
- An overview of all nanopack tools☆280Updated 2 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆290Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆445Updated 3 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆368Updated 11 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆245Updated 5 years ago
- TransDecoder source☆299Updated 4 months ago
- Program for analysing NGS data.☆252Updated 11 months ago
- Eukaryotic Genome Annotation Pipeline☆380Updated 3 weeks ago
- k-mer based assembly evaluation☆338Updated last year
- ☆271Updated 7 months ago
- Any Way to Show Multi genomic Synteny☆217Updated 7 months ago
- Finds SNP sites from a multi-FASTA alignment file☆273Updated 5 years ago
- Filtering and trimming of long read sequencing data☆214Updated 3 years ago
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- De-Novo Repeat Discovery Tool☆229Updated 6 months ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆291Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 5 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆381Updated last week