simonhmartin / genomics_general
General tools for genomic analyses.
☆343Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for genomics_general
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆294Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆474Updated 9 months ago
- Synteny and Rearrangement Identifier☆344Updated 3 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆308Updated 5 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆341Updated 2 years ago
- quality filtering tool for long reads☆292Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆178Updated 9 months ago
- Fast and accurate de novo assembler for long reads☆370Updated 6 months ago
- Finds SNP sites from a multi-FASTA alignment file☆241Updated 3 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆276Updated 3 weeks ago
- Plotting scripts for long read sequencing data☆435Updated last month
- Program for analysing NGS data.☆231Updated last week
- TransDecoder source☆276Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆365Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆287Updated this week
- A complete pipeline for metagenomic analysis☆382Updated last week
- Assembly and binning of metagenomes☆217Updated this week
- Extensive de-novo TE Annotator☆349Updated 3 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆231Updated 2 weeks ago
- De-Novo Repeat Discovery Tool☆195Updated last week
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆232Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆271Updated last month
- Eukaryotic Genome Annotation Pipeline☆321Updated 3 months ago
- Tutorials on phylogenetic and phylogenomic inference☆367Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆321Updated last year
- Genome Assembly and Annotation Service code☆202Updated 11 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆186Updated 3 months ago
- Structural variation caller using third generation sequencing☆561Updated last week
- Rapid large-scale prokaryote pan genome analysis☆324Updated 2 years ago
- Genome assembly evaluation tool☆410Updated last week