Alternatives and similar repositories for genomics_general

Users that are interested in genomics_general are comparing it to the libraries listed below

• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆318Updated 2 years ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆369Updated 3 years ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆535Updated last year
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆366Updated 3 weeks ago
• oushujun / EDTA
  Extensive de-novo TE Annotator
  ☆411Updated 3 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆241Updated 4 years ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆394Updated last year
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆413Updated 5 months ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆426Updated 8 months ago
• Kinggerm / GetOrganelle
  Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
  ☆347Updated 7 months ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆321Updated 6 months ago
• mmatschiner / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆389Updated 2 years ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆270Updated this week
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆365Updated 3 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆333Updated last month
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆373Updated last year
• TransDecoder / TransDecoder
  TransDecoder source
  ☆298Updated last week
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆210Updated 3 months ago
• PASApipeline / PASApipeline
  PASA software
  ☆193Updated 7 months ago
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆220Updated 2 months ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆386Updated 3 months ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆191Updated last year
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆351Updated 2 months ago
• ablab / quast
  Genome assembly evaluation tool
  ☆467Updated 10 months ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆270Updated 2 years ago
• alekseyzimin / masurca
  ☆263Updated 3 months ago
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆482Updated last month
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆204Updated 3 months ago
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆364Updated last week
• wdecoster / NanoPlot
  Plotting scripts for long read sequencing data
  ☆504Updated last month