General tools for genomic analyses.
☆388Feb 28, 2025Updated last year
Alternatives and similar repositories for genomics_general
Users that are interested in genomics_general are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- Tutorials on evolutionary genomics☆46Mar 11, 2022Updated 4 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆173Aug 8, 2024Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Scripts for analysis used during the course☆96Apr 30, 2024Updated last year
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆333Jul 7, 2023Updated 2 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆103Jun 13, 2022Updated 3 years ago
- Tutorials on phylogenetic and phylogenomic inference☆396Sep 13, 2023Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- Program for analysing NGS data.☆256Mar 6, 2025Updated last year
- 整理常用的群体遗传学分析流程和脚本☆120Jan 16, 2026Updated 2 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆157Oct 27, 2025Updated 4 months ago
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 3 years ago
- Haplotype based scans for selection☆143Mar 10, 2026Updated 2 weeks ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆203Aug 15, 2024Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆212Jan 17, 2024Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆292Feb 25, 2026Updated last month
- A software package for local ancestry inference and haplotype phasing☆45Apr 20, 2023Updated 2 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Jun 14, 2021Updated 4 years ago
- ☆44May 8, 2024Updated last year
- Official home of genome aligner based upon notion of Cactus graphs☆664Updated this week
- Python library to facilitate genome assembly, annotation, and comparative genomics☆893Mar 12, 2026Updated last week
- Useful bioinformatic scripts☆60Feb 23, 2026Updated last month
- Application of pan-genome for population☆116Oct 26, 2025Updated 4 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- Tools test whether admixture occurred and more☆222Sep 6, 2024Updated last year
- Scripts for Wang et al (2020) Evidence for widespread selection in shaping the genomic landscape during speciation of Populus.☆11Feb 15, 2020Updated 6 years ago
- feature-based deep learning for the identification of selective sweeps☆59Feb 7, 2026Updated last month
- An accurate GFF3/GTF lift over pipeline☆531Aug 1, 2023Updated 2 years ago
- Synteny and Rearrangement Identifier☆454Mar 17, 2026Updated last week
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Nov 30, 2025Updated 3 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆66Sep 19, 2025Updated 6 months ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 6 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆561Feb 14, 2024Updated 2 years ago