jesvedberg / Ancestry_HMM-SLinks
Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
☆17Updated last year
Alternatives and similar repositories for Ancestry_HMM-S
Users that are interested in Ancestry_HMM-S are comparing it to the libraries listed below
Sorting:
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆17Updated last month
- ☆43Updated 3 months ago
- Infer demographic history with the Moran model☆48Updated 2 months ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- Topology weighting from unphased genotypes of any ploidy☆13Updated last month
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Updated 4 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- ☆12Updated 5 years ago
- Automated pipeline for running CoalHMM☆13Updated last year
- Software for detecting introgression using supervised machine learning☆21Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- ☆12Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- ☆16Updated 3 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Selection outlier scan with population branch statistic☆14Updated last year
- Scripts for population genetics analysis☆20Updated 2 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- Graph-aware Retrieval of Selective Sweeps☆21Updated 11 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 6 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 5 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆48Updated 3 weeks ago
- Software package for estimating fine-scale recombination rate.☆16Updated 4 years ago
- The repository serves as a public and official hosting of the pSONIC program (Conover et al., 2021).