Alternatives and similar repositories for dfs

Users that are interested in dfs are comparing it to the libraries listed below

• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 3 years ago
• GenisGE / evalAdmix
  ☆15Updated last year
• bwringe / hybriddetective
  ☆15Updated 2 years ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 6 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 7 years ago
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆19Updated 2 years ago
• btmartin721 / ClineHelpR
  Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…
  ☆16Updated last year
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆18Updated 5 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆50Updated 6 months ago
• clairemerot / physalia_adaptation_course
  ☆18Updated 2 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆21Updated 6 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• LohseLab / gIMble
  A genome-wide IM blockwise likelihood estimation toolkit
  ☆17Updated last year
• pdimens / harpy
  Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!
  ☆18Updated last week
• Sendrowski / fastDFE
  Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…
  ☆18Updated last week
• pdimens / LepWrap
  A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
  ☆14Updated 6 months ago
• novikovalab / piawka
  The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support
  ☆31Updated 2 weeks ago
• jingwanglab / Populus-Genomic-Consequences-of-Hybridization
  ☆16Updated 3 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆33Updated 2 years ago
• qiyunzhu / BeforePhylo
  Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction
  ☆11Updated 11 years ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆19Updated 6 years ago
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆23Updated 7 months ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 10 months ago
• ComparativeGenomicsToolkit / neutral-model-estimator
  Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit
  ☆11Updated 5 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• SwallowGenomics / BarnSwallow
  ☆12Updated 2 years ago
• evolgenomics / haplotagging
  Code and binaries related to processing haplotagging data
  ☆15Updated 3 years ago
• MorrellLAB / BAD_Mutations
  Deleterious mutation prediction pipeline
  ☆13Updated last year
• jradrion / TEFLoN
  TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
  ☆13Updated 4 years ago