simonhmartin / dfsLinks
D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
☆19Updated 5 years ago
Alternatives and similar repositories for dfs
Users that are interested in dfs are comparing it to the libraries listed below
Sorting:
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Updated 2 years ago
- ☆15Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- ☆15Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated last week
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Updated 4 months ago
- Scripts for population genetics analysis☆20Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.☆14Updated 5 months ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 9 months ago
- ☆16Updated 3 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆29Updated 6 years ago
- ☆13Updated 3 months ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Updated 11 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- ☆18Updated 2 years ago
- Infer demographic history with the Moran model☆50Updated 5 months ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated last year
- R package to draw syntenic plots in 3 different styles☆42Updated 3 months ago
- Analyze and simulate Pool-Seq time series data☆17Updated 3 years ago
- ☆12Updated 2 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆17Updated last year
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- Deleterious mutation prediction pipeline☆13Updated 11 months ago
- Scripts and resources for the haploblocks manuscript☆17Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago