D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
☆19Sep 19, 2020Updated 5 years ago
Alternatives and similar repositories for dfs
Users that are interested in dfs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Mar 27, 2026Updated last month
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- Presentations from the course☆39Aug 28, 2023Updated 2 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆16Feb 26, 2026Updated 2 months ago
- ☆13Aug 18, 2023Updated 2 years ago
- General tools for genomic analyses.☆390Mar 25, 2026Updated last month
- ☆12Feb 16, 2026Updated 2 months ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 10 months ago
- The SPrime program identifies variants that are introgressed from archaic populations.☆28May 21, 2022Updated 3 years ago
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆45Dec 21, 2021Updated 4 years ago
- Genetic Algorithm for Demographic Model Analysis☆54Feb 3, 2026Updated 2 months ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An R interface for the ADMIXTOOLS software☆36Nov 24, 2025Updated 5 months ago
- Scripts to handle NGS data and other biological data☆22Jan 24, 2024Updated 2 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- CoalHMM☆22Nov 4, 2013Updated 12 years ago
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆31Apr 15, 2026Updated 2 weeks ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 7 years ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆25Mar 20, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GONE: Scripts, programs and an example data set☆54Jul 20, 2025Updated 9 months ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated 2 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- Sorting Intolerant From Tolerant For Genomes☆32Nov 3, 2017Updated 8 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 3 months ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 2 months ago
- ☆12Jun 12, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Synteny Mapping and Analysis Program☆30Apr 1, 2026Updated last month
- ☆13Apr 30, 2019Updated 7 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆173Apr 17, 2026Updated 2 weeks ago
- A pipeline that accepts a VCF file to run through Admixture☆64Updated this week
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Scripts for analysis used during the course☆96Apr 30, 2024Updated 2 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated last month