D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
☆19Sep 19, 2020Updated 5 years ago
Alternatives and similar repositories for dfs
Users that are interested in dfs are comparing it to the libraries listed below
Sorting:
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Nov 30, 2025Updated 3 months ago
- ☆15Updated this week
- ☆13Aug 18, 2023Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆185Dec 19, 2024Updated last year
- Presentations from the course☆39Aug 28, 2023Updated 2 years ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 8 months ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- ☆12Feb 16, 2026Updated 2 weeks ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated last month
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 2 weeks ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- GONE: Scripts, programs and an example data set☆51Jul 20, 2025Updated 7 months ago
- General tools for genomic analyses.☆386Feb 28, 2025Updated last year
- Genetic Algorithm for Demographic Model Analysis☆54Feb 3, 2026Updated last month
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 3 years ago
- The SPrime program identifies variants that are introgressed from archaic populations.☆27May 21, 2022Updated 3 years ago
- CoalHMM☆22Nov 4, 2013Updated 12 years ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated 10 months ago
- ☆15Mar 20, 2023Updated 2 years ago
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆45Dec 21, 2021Updated 4 years ago
- Synteny Mapping and Analysis Program☆30Feb 14, 2026Updated 2 weeks ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- R Port of psmc☆17Mar 16, 2023Updated 2 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated 10 months ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Scripts for population genetics analysis☆20Nov 10, 2022Updated 3 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Jan 2, 2025Updated last year
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Updated this week
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated last year
- ☆17Oct 21, 2024Updated last year
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Dec 4, 2025Updated 2 months ago