MitoDNA extending assembler from NGS data
☆23Mar 19, 2026Updated last month
Alternatives and similar repositories for MEANGS
Users that are interested in MEANGS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated 2 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆143Nov 6, 2024Updated last year
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆198Feb 4, 2024Updated 2 years ago
- HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high…☆10Apr 15, 2025Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆97Apr 24, 2026Updated last week
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated 10 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆379Feb 13, 2025Updated last year
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated 2 weeks ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆196May 11, 2025Updated 11 months ago
- MITObim - mitochondrial baiting and iterative mapping☆115Dec 29, 2020Updated 5 years ago
- Cellular Mitochondrial Analysis☆15Oct 25, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆115Sep 2, 2025Updated 8 months ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Oct 31, 2025Updated 6 months ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Nov 29, 2022Updated 3 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 7 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 3 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- ☆19Nov 19, 2025Updated 5 months ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆29Jul 16, 2022Updated 3 years ago
- Heuristic, parsimony-based ancestral recombination graph inference☆17Aug 25, 2021Updated 4 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- ☆10Jun 13, 2020Updated 5 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Apr 13, 2026Updated 3 weeks ago
- ☆12Nov 23, 2020Updated 5 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆54Dec 10, 2025Updated 4 months ago
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆24Oct 20, 2025Updated 6 months ago