hillerlab / IterativeErrorCorrection
Iterative error correction of long reads
☆12Updated 2 years ago
Alternatives and similar repositories for IterativeErrorCorrection:
Users that are interested in IterativeErrorCorrection are comparing it to the libraries listed below
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 4 months ago
- ☆16Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 11 months ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 10 months ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 6 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆17Updated 9 months ago
- ☆15Updated 7 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 7 months ago
- Identification of conserved non-coding sequences in plants☆17Updated 3 months ago
- defusion☆14Updated 3 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 2 years ago
- profile the repeat landscape in a genome☆15Updated 10 years ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated 2 weeks ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated last month
- ☆26Updated 3 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Phasing reads with secondary alignments☆18Updated 4 months ago
- ☆12Updated 10 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Benchmarking variant calling in polyploids☆13Updated 3 years ago