almeidasilvaf / cogeqcLinks
An R package to perform systematic quality checks on comparative genomics analyses
☆11Updated last year
Alternatives and similar repositories for cogeqc
Users that are interested in cogeqc are comparing it to the libraries listed below
Sorting:
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆12Updated this week
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 3 years ago
- ☆16Updated 2 months ago
- Consensus genome annotation using OMA☆26Updated 2 months ago
- parallelLastz: Running Lastz in parallel☆16Updated 11 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- ☆20Updated last year
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 2 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆16Updated 2 years ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated 3 weeks ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆14Updated last year
- Tandem Repeats Finder: a program to analyze DNA sequences☆16Updated last month
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Genome alignment and synteny plots☆31Updated 2 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 2 months ago
- ☆12Updated last year
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆14Updated last year
- A Swiss-Army-Knife for Bioinformaticians☆12Updated this week
- The MafFilter genome alignment processor☆19Updated 3 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆27Updated 3 weeks ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Updated 3 years ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆14Updated last year
- ☆15Updated 5 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆19Updated this week
- ☆27Updated last year
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Updated last month