almeidasilvaf / cogeqcLinks
An R package to perform systematic quality checks on comparative genomics analyses
☆11Updated last year
Alternatives and similar repositories for cogeqc
Users that are interested in cogeqc are comparing it to the libraries listed below
Sorting:
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- ☆12Updated last year
- ☆16Updated last month
- parallelLastz: Running Lastz in parallel☆15Updated 10 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Consensus genome annotation using OMA☆26Updated last month
- ☆21Updated this week
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- que paquete☆9Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated last month
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆14Updated last year
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆16Updated 2 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆14Updated 11 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆16Updated last week
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 2 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Sketch phylogenetic trees and networks☆20Updated this week
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆19Updated this week
- Infering ancestral synteny with hierarchical orthologous groups☆16Updated this week
- The MafFilter genome alignment processor☆19Updated 2 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- A Swiss-Army-Knife for Bioinformaticians☆12Updated last week
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated 2 weeks ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Updated 3 years ago
- ☆20Updated last year
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 3 months ago