Alternatives and similar repositories for F4:

Users that are interested in F4 are comparing it to the libraries listed below

• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 2 months ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆50Updated 6 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 7 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆34Updated last year
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• tsackton / linked-selection
  ☆24Updated 7 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated this week
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆49Updated last week
• clairemerot / angsd_pipeline
  ☆26Updated last year
• popgenDK / SATC
  Sex assignment through coverage
  ☆17Updated last year
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated 3 months ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆18Updated this week
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆55Updated last week
• owensgl / haploblocks
  Scripts and resources for the haploblocks manuscript
  ☆16Updated 5 years ago
• russcd / Ancestry_HMM
  ☆28Updated 2 years ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆51Updated 2 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆32Updated 3 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆20Updated 5 years ago
• pimbongaerts / radseq
  Collection of Python scripts for parsing/analyses of RAD-seq data
  ☆22Updated 2 months ago
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆21Updated last year
• zhangfumin / domestication
  ☆18Updated 2 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 9 months ago