Assessing confidence in introgression among four populations
☆28Apr 19, 2021Updated 4 years ago
Alternatives and similar repositories for F4
Users that are interested in F4 are comparing it to the libraries listed below
Sorting:
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 8 years ago
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 4 months ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- ☆13Apr 30, 2019Updated 6 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- ☆13Sep 11, 2025Updated 5 months ago
- Genetic Algorithm for Demographic Model Analysis☆54Feb 3, 2026Updated last month
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆185Dec 19, 2024Updated last year
- ☆13Jan 16, 2026Updated last month
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- Scripts for population genetics analysis☆20Nov 10, 2022Updated 3 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 12 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆156Oct 27, 2025Updated 4 months ago
- Collection of Python scripts for parsing/analyses of RAD-seq data☆24Mar 5, 2025Updated last year
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated 2 months ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jan 28, 2026Updated last month
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Updated this week
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆111Feb 17, 2026Updated 2 weeks ago
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆26Feb 16, 2018Updated 8 years ago
- Drawing functions for Demes demographic models☆24Updated this week
- Tutorial on using popular tools for learning about population history☆53Jul 18, 2018Updated 7 years ago
- Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions☆12Dec 18, 2025Updated 2 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Nov 15, 2023Updated 2 years ago
- Programs to analyse NGS data for population genetics purposes☆179Aug 27, 2024Updated last year
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- A software package for local ancestry inference and haplotype phasing☆45Apr 20, 2023Updated 2 years ago
- ☆48Oct 17, 2025Updated 4 months ago
- Estimate population history parameters from site pattern frequencies.☆12Dec 2, 2025Updated 3 months ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- ☆44Sep 5, 2023Updated 2 years ago