mmatschiner / F4Links
Assessing confidence in introgression among four populations
☆27Updated 4 years ago
Alternatives and similar repositories for F4
Users that are interested in F4 are comparing it to the libraries listed below
Sorting:
- Infer demographic history with the Moran model☆49Updated 5 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆39Updated last year
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- ☆31Updated 2 years ago
- ☆24Updated 8 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- GONE: Scripts, programs and an example data set☆47Updated 4 months ago
- Tutorial about R package PopGenome☆44Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆49Updated 3 months ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- predicting DFE and alpha from polymorphism data☆27Updated 7 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- ☆53Updated 5 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated last month
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆25Updated 3 weeks ago
- Sampling and inference of genealogies with recombination☆46Updated 5 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- DFOIL: Introgression Testing for Five Taxa☆33Updated 4 years ago
- Sex assignment through coverage☆20Updated 5 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- ☆42Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆55Updated 4 months ago
- Topology weighting from unphased genotypes of any ploidy☆17Updated 3 months ago
- Methods for examining PCA locally along the genome.☆86Updated last year