BenoitMorel / Asteroid
☆9Updated 6 months ago
Related projects: ⓘ
- spruceup☆19Updated 3 weeks ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆10Updated 9 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆12Updated last year
- Tool for fully-automated inference of species trees from raw genome assemblies☆19Updated last week
- Gene tree - species tree reconciliation from gene tree distributions☆17Updated last month
- A Swiss-Army-Knife for Bioinformaticians☆10Updated 2 months ago
- ☆21Updated 10 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆20Updated 6 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆12Updated 2 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆16Updated 2 months ago
- Codon-Aware Multiple Sequence Alignments☆18Updated 3 months ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆21Updated last week
- R package for comparison of synteny conservation at the genome-wide scale.☆13Updated 3 months ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆11Updated 3 months ago
- ☆19Updated 3 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆23Updated 3 months ago
- Automatic evaluation of HGTs☆21Updated last week
- ☆13Updated 3 years ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆32Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆19Updated 3 years ago
- Genome alignment and synteny plots☆27Updated last year
- ASTRAL for PaRalogs and Orthologs☆19Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆28Updated 2 years ago
- que paquete☆10Updated 2 months ago
- ContScout sequence contamination filter tool☆13Updated last month
- Bayesian molecular clock dating tutorial with genome-scale datasets☆16Updated 2 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆13Updated last year