Fast, accurate species tree estimation.
☆13Aug 17, 2026Updated last month
Alternatives and similar repositories for ASTRID
Users that are interested in ASTRID are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Jun 19, 2025Updated last year
- ☆16Apr 11, 2026Updated 5 months ago
- Phylogenetic penalized likelihood☆59Sep 8, 2026Updated 2 weeks ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆22Jun 11, 2026Updated 3 months ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 6 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 8 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆13Oct 31, 2025Updated 10 months ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆55May 14, 2025Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 6 years ago
- ☆22Aug 14, 2026Updated last month
- Visualing species tree from ASTRAL with gene tree discordance☆35Aug 21, 2026Updated last month
- PASTA (Practical Alignment using SATe and Transitivity)☆97Jun 5, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Mar 20, 2023Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 3 years ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 9 years ago
- SimPhy: A comprehensive simulator of gene family evolution☆36Jun 30, 2023Updated 3 years ago
- STAG: Species Tree from All Genes☆37Dec 10, 2018Updated 7 years ago
- ASTRAL for PaRalogs and Orthologs☆24Sep 13, 2022Updated 4 years ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆115Sep 11, 2026Updated last week
- Assembly chloroplast genome and validate conformation☆15May 21, 2024Updated 2 years ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ALignment Transformation EnviRonment☆12May 8, 2018Updated 8 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- ☆49Sep 5, 2023Updated 3 years ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆259Jun 25, 2026Updated 2 months ago
- Automatically exported from code.google.com/p/densitree☆32Updated this week
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- Accurate Species TRee ALgorithm☆280Apr 1, 2024Updated 2 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Aug 17, 2026Updated last month
- Visualizing gene tree conflict using Phyparts, and ETE3☆15Jun 17, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- Implementation of the TreeShrink problem☆59May 28, 2026Updated 3 months ago
- CoalHMM☆23Nov 4, 2013Updated 12 years ago
- Dynamic CPU/GPU power scaling to maximize renewable energy usage and reduce emissions☆18Apr 11, 2025Updated last year
- ☆14Jan 21, 2021Updated 5 years ago
- Best-fit model selection☆90Mar 21, 2024Updated 2 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Mar 18, 2019Updated 7 years ago