Fast, accurate species tree estimation.
☆12Aug 29, 2024Updated last year
Alternatives and similar repositories for ASTRID
Users that are interested in ASTRID are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 5 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 9 months ago
- ☆16Feb 20, 2024Updated 2 years ago
- Phylogenetic penalized likelihood☆54Jun 27, 2025Updated 9 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆22Oct 31, 2025Updated 4 months ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 2 weeks ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆11Aug 28, 2018Updated 7 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆12Oct 31, 2025Updated 4 months ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆53May 14, 2025Updated 10 months ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 5 years ago
- PASTA (Practical Alignment using SATe and Transitivity)☆95Jun 5, 2025Updated 9 months ago
- ☆21Dec 30, 2025Updated 2 months ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- STAG: Species Tree from All Genes☆35Dec 10, 2018Updated 7 years ago
- SimPhy: A comprehensive simulator of gene family evolution☆34Jun 30, 2023Updated 2 years ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆112Mar 20, 2026Updated last week
- ALignment Transformation EnviRonment☆11May 8, 2018Updated 7 years ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 4 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 10 years ago
- ☆15Mar 20, 2023Updated 3 years ago
- ASTRAL for PaRalogs and Orthologs☆22Sep 13, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆229Jan 4, 2026Updated 2 months ago
- Automatically exported from code.google.com/p/densitree☆29Jul 27, 2025Updated 7 months ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- ☆44Sep 5, 2023Updated 2 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Mar 20, 2026Updated last week
- Accurate Species TRee ALgorithm☆275Apr 1, 2024Updated last year
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 2 years ago
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 4 years ago
- Implementation of the TreeShrink problem☆55Sep 13, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Dynamic CPU/GPU power scaling to maximize renewable energy usage and reduce emissions☆17Apr 11, 2025Updated 11 months ago
- Assembly chloroplast genome and validate conformation☆15May 21, 2024Updated last year
- ☆14Jan 21, 2021Updated 5 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆27May 13, 2025Updated 10 months ago
- Best-fit model selection☆88Mar 21, 2024Updated 2 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Mar 18, 2019Updated 7 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago