Fast, accurate species tree estimation.
☆13Aug 29, 2024Updated last year
Alternatives and similar repositories for ASTRID
Users that are interested in ASTRID are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆12Jun 19, 2025Updated last year
- ☆16Apr 11, 2026Updated 2 months ago
- Phylogenetic penalized likelihood☆57Jun 27, 2025Updated last year
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆22Jun 11, 2026Updated 3 weeks ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 3 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 7 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆13Oct 31, 2025Updated 8 months ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆55May 14, 2025Updated last year
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 6 years ago
- PASTA (Practical Alignment using SATe and Transitivity)☆96Jun 5, 2025Updated last year
- ☆22Jun 24, 2026Updated last week
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- SimPhy: A comprehensive simulator of gene family evolution☆36Jun 30, 2023Updated 3 years ago
- STAG: Species Tree from All Genes☆36Dec 10, 2018Updated 7 years ago
- ALignment Transformation EnviRonment☆11May 8, 2018Updated 8 years ago
- GenomeThreader gene prediction software.☆14Nov 10, 2025Updated 7 months ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆113Jun 23, 2026Updated last week
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- ☆15Mar 20, 2023Updated 3 years ago
- ASTRAL for PaRalogs and Orthologs☆24Sep 13, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆251Jun 25, 2026Updated last week
- Automatically exported from code.google.com/p/densitree☆30Jul 27, 2025Updated 11 months ago
- A tool for divide-and-conquer tree estimation via a shared distance matrix☆10Mar 19, 2019Updated 7 years ago
- ☆46Sep 5, 2023Updated 2 years ago
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Jun 10, 2026Updated 3 weeks ago
- Accurate Species TRee ALgorithm☆279Apr 1, 2024Updated 2 years ago
- Visualizing gene tree conflict using Phyparts, and ETE3☆14Jun 17, 2023Updated 3 years ago
- Fast and frugal disk based k-mer counter☆14Apr 1, 2021Updated 5 years ago
- Implementation of the TreeShrink problem☆56May 28, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Dynamic CPU/GPU power scaling to maximize renewable energy usage and reduce emissions☆17Apr 11, 2025Updated last year
- Assembly chloroplast genome and validate conformation☆15May 21, 2024Updated 2 years ago
- ☆14Jan 21, 2021Updated 5 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆33Updated this week
- Best-fit model selection☆89Mar 21, 2024Updated 2 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Mar 18, 2019Updated 7 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago