Genome-wide scan for balancing selection using beta statistic
☆32Apr 26, 2023Updated 2 years ago
Alternatives and similar repositories for BetaScan
Users that are interested in BetaScan are comparing it to the libraries listed below
Sorting:
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- ☆13Mar 7, 2021Updated 5 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Feb 28, 2026Updated 3 weeks ago
- Inferring natural selection by comparative population genomic analysis across species☆26Oct 31, 2023Updated 2 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- Time-stratified f-statistics☆15Aug 1, 2025Updated 7 months ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated last year
- Likelihood-based Selective Sweep Detection☆41Oct 12, 2023Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆65Sep 19, 2025Updated 6 months ago
- SV genotyper for long reads with a variation graph☆15Aug 11, 2025Updated 7 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Aug 21, 2018Updated 7 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆157Oct 27, 2025Updated 4 months ago
- ☆24Jun 9, 2017Updated 8 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- command-line tools for the management of genotype likelihoods and allele counts☆30Feb 12, 2024Updated 2 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 5 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆44Mar 7, 2024Updated 2 years ago
- ☆21Dec 13, 2024Updated last year
- ☆68Dec 5, 2022Updated 3 years ago
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 3 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆40Nov 15, 2023Updated 2 years ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Reference bias measuring toolkit☆20Mar 12, 2026Updated last week
- Simple pileup-based variant caller☆94Apr 25, 2025Updated 10 months ago
- Sampling and inference of genealogies with recombination☆53Updated this week
- R code to compute the Singleton Density Score (SDS)☆30Sep 19, 2016Updated 9 years ago
- Pangenome Mutation-Annotated Networks☆38Feb 13, 2026Updated last month
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 2 weeks ago
- Tutorial on using popular tools for learning about population history☆53Jul 18, 2018Updated 7 years ago
- Assessing confidence in introgression among four populations☆28Apr 19, 2021Updated 4 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 9 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago