standard-aaron / cluesLinks
Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data
☆26Updated 3 years ago
Alternatives and similar repositories for clues
Users that are interested in clues are comparing it to the libraries listed below
Sorting:
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14Updated 2 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- ☆13Updated 4 years ago
- Analyze and simulate Pool-Seq time series data☆17Updated 3 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Updated last year
- Sampling and inference of genealogies with recombination☆47Updated 6 months ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 6 years ago
- ☆32Updated 2 years ago
- ☆46Updated 2 months ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆14Updated 4 months ago
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Software for detecting introgression using supervised machine learning☆21Updated 3 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated this week
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 10 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆16Updated 8 months ago
- Deleterious mutation prediction pipeline☆13Updated last year
- R package for analysis of hybrids and hybrid zones☆21Updated 2 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Updated 5 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 6 months ago