standard-aaron / clues
Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data
☆25Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for clues
- Infer demographic history with the Moran model☆47Updated 7 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 2 months ago
- Assessing confidence in introgression among four populations☆26Updated 3 years ago
- ☆26Updated last year
- Sampling and inference of genealogies with recombination☆24Updated last month
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆46Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆30Updated 7 months ago
- ARG-based inference of selection using deep learning☆16Updated last year
- Tutorial on using popular tools for learning about population history☆49Updated 6 years ago
- feature-based deep learning for the identification of selective sweeps☆50Updated 2 months ago
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- Population genetics analyses from NGS data☆25Updated 3 years ago
- ☆24Updated 7 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆11Updated 2 months ago
- Pinpoints the mutation favored by selection☆32Updated 3 years ago
- ☆13Updated 3 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆13Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆39Updated 5 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆13Updated 3 weeks ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 4 years ago
- Sex assignment through coverage☆17Updated 8 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆23Updated 8 months ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆24Updated 2 months ago
- Likelihood-based Selective Sweep Detection☆35Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆47Updated 3 months ago
- ☆41Updated 3 months ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Tools for inference of the DFE with dadi☆14Updated 3 years ago