Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data
☆26Jul 8, 2022Updated 3 years ago
Alternatives and similar repositories for clues
Users that are interested in clues are comparing it to the libraries listed below
Sorting:
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated 10 months ago
- predicting DFE and alpha from polymorphism data☆28Oct 4, 2018Updated 7 years ago
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated 11 months ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 4 months ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Feb 6, 2026Updated 3 weeks ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- ☆32Jan 5, 2023Updated 3 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated 10 months ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- GONE: Scripts, programs and an example data set☆51Jul 20, 2025Updated 7 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Dec 4, 2025Updated 2 months ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Dec 18, 2025Updated 2 months ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Jun 14, 2021Updated 4 years ago
- Genealogical Estimation of Variant Age (GEVA)☆32Sep 30, 2021Updated 4 years ago
- Sampling and inference of genealogies with recombination☆53Jun 20, 2025Updated 8 months ago
- Genome Analysis Workshop (Jena 2016) material☆18Mar 3, 2017Updated 8 years ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- ☆34Jan 14, 2026Updated last month
- Simulate ARGs and genomic sequence data using population genetic models☆210Updated this week
- ARG-based inference of selection using deep learning☆17Aug 31, 2023Updated 2 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- ☆13Sep 11, 2025Updated 5 months ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 2 weeks ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 6 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated last month
- Infer the age of ancestral nodes in a tree sequence.☆24Feb 3, 2026Updated 3 weeks ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆15Updated this week
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year