Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data
☆27Jul 8, 2022Updated 4 years ago
Alternatives and similar repositories for clues
Users that are interested in clues are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- predicting DFE and alpha from polymorphism data☆29Oct 4, 2018Updated 7 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Oct 12, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simulate ARGs and genomic sequence data using population genetic models☆217Updated this week
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 4 months ago
- ☆32Jan 5, 2023Updated 3 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Updated this week
- ARG-based inference of selection using deep learning☆18Aug 31, 2023Updated 3 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆25Updated this week
- Sampling and inference of genealogies with recombination☆63Aug 21, 2026Updated 3 weeks ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 3 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Sep 19, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- ☆33Jan 14, 2026Updated 8 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆19Mar 31, 2026Updated 5 months ago
- ☆13Aug 18, 2023Updated 3 years ago
- Genealogical Estimation of Variant Age (GEVA)☆33Sep 30, 2021Updated 4 years ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Updated this week
- Infer the age of ancestral nodes in a tree sequence.☆27Jun 30, 2026Updated 2 months ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Genome Analysis Workshop (Jena 2016) material☆18Aug 14, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Infer a tree sequence from genetic variation data.☆65Sep 8, 2026Updated last week
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆90Jun 14, 2021Updated 5 years ago
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Feb 23, 2026Updated 6 months ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 9 years ago
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 3 years ago
- Ascertained Sequentially Markovian Coalescent☆19Oct 22, 2025Updated 10 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Hybridization detection using phylogenetic invariants☆53Oct 29, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆20Dec 18, 2025Updated 9 months ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 7 months ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆46May 19, 2026Updated 4 months ago