Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data
☆27Jul 8, 2022Updated 3 years ago
Alternatives and similar repositories for clues
Users that are interested in clues are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆21Apr 9, 2025Updated last year
- Estimation of population genetic parameters using deep learning☆29Apr 2, 2025Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- predicting DFE and alpha from polymorphism data☆29Oct 4, 2018Updated 7 years ago
- Ascertained Sequentially Markovian Coalescent☆18Oct 22, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Simulate ARGs and genomic sequence data using population genetic models☆217Updated this week
- ARG-based inference of selection using deep learning☆18Aug 31, 2023Updated 2 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆16Jun 21, 2026Updated last week
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 3 years ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- GONE: Scripts, programs and an example data set☆56May 12, 2026Updated last month
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- ☆32Jan 5, 2023Updated 3 years ago
- Sampling and inference of genealogies with recombination☆57Apr 10, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆34Jan 14, 2026Updated 5 months ago
- ☆13Aug 18, 2023Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆33Sep 30, 2021Updated 4 years ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Jun 25, 2026Updated last week
- Joint inference of heterozygosity rates and runs of homozygosity☆22Dec 12, 2025Updated 6 months ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Updated this week
- Genome Analysis Workshop (Jena 2016) material☆18Mar 3, 2017Updated 9 years ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 31, 2026Updated 3 months ago
- Infer a tree sequence from genetic variation data.☆64Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 8 years ago
- Infer the age of ancestral nodes in a tree sequence.☆27Updated this week
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆89Jun 14, 2021Updated 5 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Nov 13, 2020Updated 5 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13May 1, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Feb 23, 2026Updated 4 months ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 5 months ago
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated last year
- SMC++ infers population history from whole-genome sequence data.☆176Jan 20, 2024Updated 2 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- Software for estimating genome-wide genealogies for thousands of samples☆44May 19, 2026Updated last month