Alternatives and similar repositories for Ratatosk

Users that are interested in Ratatosk are comparing it to the libraries listed below

• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆111Updated last year
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆78Updated 5 months ago
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆121Updated 8 months ago
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆119Updated this week
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆134Updated 3 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆77Updated 4 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆121Updated 4 months ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆102Updated last year
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆72Updated 4 months ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆85Updated last year
• AntonBankevich / LJA
  ☆119Updated 3 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆92Updated last month
• vpc-ccg / haslr
  A fast tool for hybrid genome assembly of long and short reads
  ☆78Updated 5 years ago
• kjenike / panagram
  ☆68Updated last week
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 2 months ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆101Updated 2 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆15Updated 2 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆99Updated this week
• mobinasri / flagger
  Evaluating genome assemblies
  ☆114Updated 3 weeks ago
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆90Updated last year
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 3 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆95Updated 9 months ago
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆94Updated 6 months ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆49Updated 11 months ago
• twolinin / longphase
  ☆122Updated 2 weeks ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆158Updated last month
• kishwarshafin / helen
  H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
  ☆73Updated 5 years ago
• ChaissonLab / LRA
  Long read aligner
  ☆114Updated 2 years ago