Hybrid error correction of long reads using colored de Bruijn graphs
☆108Jan 17, 2026Updated 4 months ago
Alternatives and similar repositories for Ratatosk
Users that are interested in Ratatosk are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Graph-based assembly phasing☆95Nov 25, 2025Updated 6 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- De novo genome assembler for long uncorrected reads☆232Nov 15, 2023Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆167Jun 3, 2026Updated last week
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆240Dec 29, 2023Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆241Sep 6, 2024Updated last year
- Population-wide Deletion Calling☆35Apr 16, 2025Updated last year
- ☆78Jun 12, 2020Updated 5 years ago
- Long read / genome alignment software☆319Dec 16, 2025Updated 5 months ago
- Long read aligner☆114May 26, 2023Updated 3 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- A fast approximate aligner for long DNA sequences☆288Oct 11, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- A fast K-mer counter for high-fidelity shotgun datasets☆145Jan 19, 2026Updated 4 months ago
- ☆14Sep 11, 2023Updated 2 years ago
- Unfazed by genomic variant phasing☆27May 26, 2024Updated 2 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 6 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated last month
- A fast whole-genome aligner based on de Bruijn graphs☆160Jul 6, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An accurate and ultra-fast hybrid genome assembler☆88Apr 10, 2024Updated 2 years ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆254Updated this week
- Fast and accurately polish the genome generated by long reads.☆243Jan 9, 2025Updated last year
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 6 months ago
- alignment to variation graph inducer☆159Apr 11, 2026Updated last month
- ☆129May 4, 2026Updated last month
- haplotypic duplication identification tool☆288Oct 30, 2025Updated 7 months ago
- Fast and exact gap-affine partial order alignment☆68Apr 25, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆122Apr 28, 2026Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Randomly subsample sequencing reads or alignments☆267Updated this week
- k-mer based assembly evaluation☆343May 21, 2026Updated 2 weeks ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- ☆62Sep 15, 2025Updated 8 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago