jbelyeu / unfazed
Unfazed by genomic variant phasing
☆26Updated 9 months ago
Alternatives and similar repositories for unfazed:
Users that are interested in unfazed are comparing it to the libraries listed below
- v2.x of the microassembly based somatic variant caller☆20Updated this week
- Functions to compare a SV call sets against a truth set.☆29Updated 10 months ago
- ☆23Updated 5 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated 9 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 3 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- ☆12Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 6 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated this week
- Teaching modules for Human Genome Variation Lab.☆20Updated 7 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- ☆22Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆11Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- ☆21Updated last week
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 10 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 5 months ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- Benchmark structural variant calls against a reference set☆17Updated 5 months ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 3 years ago