pachterlab / PCCALinks
Code for performing PCA followed by CCA
☆18Updated 6 years ago
Alternatives and similar repositories for PCCA
Users that are interested in PCCA are comparing it to the libraries listed below
Sorting:
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 weeks ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- tGPLVM: A Nonparametric, Generative Model for Manifold Learning with scRNA-seq experimental data☆17Updated 6 years ago
- Examples using R and 1000 genomes data☆28Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 9 months ago
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- ☆19Updated 8 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated 2 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- A rapido and lightweight method for PGS computation☆14Updated 4 months ago
- ☆12Updated 6 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 6 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- home of the bear's lair☆10Updated 8 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 3 months ago
- Single sample network reconstruction in R☆22Updated 5 years ago
- Archived version of RUVSeq☆8Updated 8 years ago
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago