pachterlab / PCCALinks
Code for performing PCA followed by CCA
☆18Updated 6 years ago
Alternatives and similar repositories for PCCA
Users that are interested in PCCA are comparing it to the libraries listed below
Sorting:
- countsimQC - Compare characteristic features of count data sets☆28Updated 2 weeks ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 10 months ago
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated 2 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 weeks ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated 2 weeks ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- Examples using R and 1000 genomes data☆28Updated 4 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- ☆16Updated last year
- R package of techniques for comparing clusterings of single-cell sequencing data☆39Updated last year
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- A rapido and lightweight method for PGS computation☆14Updated 5 months ago
- snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.☆19Updated last year
- Machine learning use cases for teaching☆13Updated 8 years ago
- Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R☆17Updated 9 years ago
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆47Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- ☆12Updated 6 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year