pachterlab / PCCALinks
Code for performing PCA followed by CCA
☆18Updated 6 years ago
Alternatives and similar repositories for PCCA
Users that are interested in PCCA are comparing it to the libraries listed below
Sorting:
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- countsimQC - Compare characteristic features of count data sets☆28Updated last month
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- ☆16Updated 7 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 10 months ago
- A rapido and lightweight method for PGS computation☆14Updated 6 months ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 years ago
- Examples using R and 1000 genomes data☆28Updated 4 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Modelling DNA methylation profiles☆23Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago
- Interactive benchmarking of ranking and assignment methods☆16Updated last month
- R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics☆12Updated 2 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated 2 years ago
- ☆10Updated 2 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆22Updated 3 years ago
- ☆16Updated last year
- Sample code for ldsc analyses in UKBB☆31Updated 2 years ago
- Get SNP proxies from the 1000 Genomes Project.☆29Updated 6 years ago
- ☆21Updated 8 years ago