Johns Hopkins University student-led genomics paper discussion group
☆13Apr 19, 2020Updated 5 years ago
Alternatives and similar repositories for genomicsjc
Users that are interested in genomicsjc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Sep 1, 2020Updated 5 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 3 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 7 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- MicrobeDirectory 2.0☆22Aug 10, 2020Updated 5 years ago
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- De Bruijn graph representation in low memory☆35Jul 6, 2024Updated last year
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year
- BagMinHash - Minwise Hashing Algorithm for Weighted Sets☆26Aug 26, 2020Updated 5 years ago
- ☆15Mar 11, 2026Updated last week
- ☆24Apr 2, 2021Updated 4 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 6 years ago
- Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research☆14Nov 29, 2021Updated 4 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Jan 25, 2024Updated 2 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Apr 28, 2021Updated 4 years ago
- ☆16Mar 15, 2026Updated last week
- ☆18Jul 9, 2018Updated 7 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- LogLog space version of MinHash by combining ideas from HyperLogLog and b-bit MinHash☆57Feb 19, 2020Updated 6 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Freelance bioinformaticians directory☆10Feb 10, 2023Updated 3 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Wrapper for OpenCV (WIP, not compilable now)☆13May 21, 2015Updated 10 years ago
- ☆10Jun 16, 2022Updated 3 years ago
- Iterate over minimizers of a DNA sequence☆32Jul 12, 2024Updated last year
- Compressing next-generation sequencing data with extreme prejudice.☆83May 31, 2022Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- K-means clustering for large single-cell datasets☆12Feb 10, 2026Updated last month
- Transcription of the Sebastian Castellio Latin translation of the Bible.☆12Apr 3, 2023Updated 2 years ago