cdarby / genomicsjc
Johns Hopkins University student-led genomics paper discussion group
☆13Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for genomicsjc
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- A long read simulator based on badread idea☆20Updated 2 years ago
- ☆25Updated 3 years ago
- Rust wrapper for the next generation (still currently in C++)☆20Updated this week
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- ☆28Updated last year
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 4 years ago
- Drug Resistance Prediction with Reference Graphs☆19Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 6 months ago
- A long-read analysis toolbox for cancer and population genomics☆20Updated 8 months ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- ☆14Updated 4 years ago
- Iterate over minimizers of a DNA sequence☆26Updated 4 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 7 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- Variant call adjudication☆16Updated 5 months ago
- Lift-over alignments from variant-aware references☆34Updated last year
- GBWT-based handle graph☆30Updated 2 weeks ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago
- Find Unique genomic Regions☆29Updated this week