FINNGEN / saige-pipelines
☆16Updated last year
Alternatives and similar repositories for saige-pipelines:
Users that are interested in saige-pipelines are comparing it to the libraries listed below
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆17Updated 8 months ago
- software package for integrative genetic association analysis☆34Updated last year
- genetic correlation between phenotypes in the UK biobank☆12Updated last year
- ☆32Updated last year
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆33Updated 2 months ago
- MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…☆11Updated 5 years ago
- ☆16Updated 7 years ago
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Updated 5 years ago
- ☆18Updated 7 years ago
- Canonical SGE cluster genotype imputation pipeline☆12Updated 9 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆12Updated last year
- Primo☆16Updated 3 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Manhattan++☆28Updated last year
- Sample code for ldsc analyses in UKBB☆30Updated 2 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆49Updated 2 months ago
- Estimate genetic correlation using predicted expression☆22Updated 7 years ago
- Repository for resources we'd like to share with the community.☆24Updated 3 years ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆28Updated 11 months ago
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Updated 2 years ago
- Sequence kernel association test (SKAT)☆49Updated 2 months ago
- ☆20Updated 2 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆30Updated last year
- An R package for generating comparative regional association plots☆18Updated 4 months ago
- Scripts used for generating Neale Lab UKB results☆19Updated 2 years ago
- Stratified squared trans-ethnic genetic correlation☆12Updated 2 years ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆31Updated 4 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated 10 months ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 5 years ago
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago