Alternatives and similar repositories for SkipPatch:

Users that are interested in SkipPatch are comparing it to the libraries listed below

• jltsiren / bwt-merge
  A tool for merging large BWTs
  ☆26Updated 4 years ago
• medvedevgroup / bloomtree-allsome
  Sequence Bloom Trees with All/Some split
  ☆11Updated 6 years ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆40Updated 2 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• ekg / drawbwt
  vector illustrations of BWT based searching on small strings
  ☆16Updated 5 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated 2 years ago
• txje / c-minhash
  Simple and fast MinHash implementation in C with Python wrapper
  ☆13Updated 4 years ago
• vicLeva / bqf
  Implementation of a Backpack Quotient Filter
  ☆11Updated 6 months ago
• isovic / minialign
  Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
  ☆10Updated 7 years ago
• jltsiren / relative-fm
  Relative data structures based on the BWT
  ☆12Updated 6 years ago
• mohsenzakeri / Movi
  Fast and cache-efficient full-text pangenome index
  ☆27Updated this week
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 3 years ago
• Kingsford-Group / splitsbt
  ☆18Updated 6 years ago
• splatlab / mantis
  Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
  ☆81Updated 10 months ago
• rob-p / BooM
  A hash map using the BooPHF perfect hash function
  ☆12Updated 8 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 4 years ago
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆46Updated last week
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 9 years ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 8 months ago
• Malfoy / PAC
  ☆10Updated 11 months ago
• cosmo-team / cosmo
  Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.
  ☆51Updated 10 months ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 2 years ago
• csirac / dynamicDBG
  Practical Dynamic de Bruijn Graphs
  ☆18Updated 4 years ago
• ddiazdom / grlBWT
  Efficient construction of the BWT using string compression
  ☆17Updated 3 months ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 2 years ago
• dkoslicki / CMash
  Fast and accurate set similarity estimation via containment min hash
  ☆42Updated 6 months ago
• marbl / MetaCarvel
  MetaCarvel: A scaffolder for metagenomes
  ☆13Updated 4 months ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆52Updated 2 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 3 years ago