COMBINE-lab / SkipPatchLinks
dynamic-updateable-index
☆11Updated 10 years ago
Alternatives and similar repositories for SkipPatch
Users that are interested in SkipPatch are comparing it to the libraries listed below
Sorting:
- A tool for merging large BWTs☆25Updated 5 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆83Updated last year
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Updated 3 weeks ago
- Implementation of a Backpack Quotient Filter☆13Updated 5 months ago
- A hash map using the BooPHF perfect hash function☆13Updated 9 years ago
- Incremental construction of FM-index for DNA sequences☆72Updated last year
- Simple and fast MinHash implementation in C with Python wrapper☆13Updated 4 months ago
- Practical Dynamic de Bruijn Graphs☆18Updated 5 years ago
- Efficient construction of the BWT using string compression☆20Updated 6 months ago
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Updated 3 years ago
- BWT-based index for graphs☆73Updated 9 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated 2 years ago
- vector illustrations of BWT based searching on small strings☆16Updated 6 years ago
- Substring index for paths in a graph☆60Updated last week
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Updated last year
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆63Updated 5 years ago
- Sequence Bloom Trees with All/Some split☆11Updated 7 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Updated last year
- ☆20Updated 5 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 9 months ago
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆35Updated last month
- Performs memory-efficient reservoir sampling on very large input files delimited by newlines☆69Updated 5 years ago
- A python toolkit for building and querying multi-string BWTs☆27Updated 8 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Updated 4 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Updated 5 years ago
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆98Updated 3 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆89Updated last week
- Implicit Interval Tree with Interpolation Index☆41Updated 3 years ago