LiuBioinfo / SeqOthello
SeqOthello supports fast coverage query and containment query.
☆12Updated 5 years ago
Alternatives and similar repositories for SeqOthello:
Users that are interested in SeqOthello are comparing it to the libraries listed below
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆18Updated 4 years ago
- Pan gGnome Viewer☆10Updated 11 months ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- ☆14Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- ☆16Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- Detects human contamination in bam files☆16Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- ☆14Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- ☆22Updated last month
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- comb aligner -- a graphical nucleotide sequence alignment tool☆9Updated 8 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 2 years ago
- ☆12Updated 3 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- ☆12Updated 3 weeks ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Population genetics analysis on VG☆16Updated 3 years ago